Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30453
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.81 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   10.0 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   10.0 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   10.0 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   10.0 

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 125 FVTSGVAISMAQFGLVFGITAILIPQLQSQKRVMLIDESTESWIAAI 265
           F+  GV I +   GL+    A    Q++ QK++ L   + + W  AI
Sbjct: 827 FIVVGVGI-IGGIGLIIIEVAYKKHQIRKQKKMELARHAADKWRGAI 872


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 317 KYGRKVANIISVLPVIVGWLL 379
           +YGR V   I+V  + V WLL
Sbjct: 132 RYGRWVTRRIAVAGIAVVWLL 152


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 74  KKQKTKENSNSAE*HREFELN 12
           K+ KTK++  S   H E E N
Sbjct: 39  KRPKTKKSQGSRTTHNELEKN 59


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 430 LKKSCSQDEVC 398
           LKK C Q+E C
Sbjct: 262 LKKLCPQEEAC 272


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 430 LKKSCSQDEVC 398
           LKK C Q+E C
Sbjct: 177 LKKLCPQEEAC 187


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 430 LKKSCSQDEVC 398
           LKK C Q+E C
Sbjct: 496 LKKLCPQEEAC 506


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 123 HCFTNGVIH 97
           HC  NGV+H
Sbjct: 24  HCHHNGVVH 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,806
Number of Sequences: 438
Number of extensions: 3427
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)