Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30449
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    29   0.55 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   0.72 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   2.9  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    25   6.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.9  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    25   8.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   8.9  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   8.9  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 96  RSTSETWG*HEWEMLLLYYVIQNKYTKMQLVIRCL 200
           RS S  WG   WE +L+  VI  + T  Q V+  L
Sbjct: 278 RSKSRVWGNESWEKVLVCVVIDGRNTVHQNVLDLL 312


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
 Frame = +2

Query: 8    AGIPSDVAATYALTFTENRI-QSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAA 184
            A + +D+   +  T     + QSD+ +D+N+E   D G T  G       H      +  
Sbjct: 969  AYVGTDMTNAFGTTTKPKDVSQSDIKVDINRESNSDNGETITG------THDVYRQTDNP 1022

Query: 185  RDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEHYTRNXXXXXXXXXXXLKRKAVQP 364
              K+ S+T+ +KV     T   T+ QP+     +  + T N           L+  +V+ 
Sbjct: 1023 EIKLPSDTASSKVD----THNPTVTQPTDDTGGLNSYNTEN----PLLTNNTLEPSSVEA 1074

Query: 365  NDNIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQTVFSRLGSNESVT 514
              +  +S+K+ K+++        L  L++S   +N  T  + + S  S T
Sbjct: 1075 IVSSKDSDKHAKESK-----GKSLAPLISSRVSTNDTTNVAGIRSQRSFT 1119


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 89  LNKEYLRDMGITRMGDVIAILRHSK-QVHENAARDKVLSNTSVNKVPVAAITGRSTLPQP 265
           +N ++L +  IT      A  R  K + H + A  K+ +    NKV   A+T +STLP  
Sbjct: 160 MNNQFLMNKPITVS---YAFKREGKGERHGDIAERKLAAAAKKNKV---AVTPQSTLPPG 213

Query: 266 SSPAS 280
            SPA+
Sbjct: 214 FSPAT 218


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 104 LRDMGITRMGDVIAILRHSKQVHENAARDKVLS 202
           +R  G    GDV+  +RH++Q+     R K +S
Sbjct: 148 IRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMS 180


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 11  GIPSDVAATYALTFTENRIQSDMLLDL 91
           G P +VAATY L  +  R+Q   ++DL
Sbjct: 399 GYPLNVAATYRLDESLLRLQMPSIVDL 425


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 185 RDKVLSNTSVNKVPVAAITGRSTL 256
           RDK+L++T    VP+  +  +S L
Sbjct: 100 RDKILNHTGTEWVPIVVVGNKSDL 123


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 233 AITGRSTLPQPSSPASRILEHYTRN 307
           +ITG+S + Q SSP  R ++ +  N
Sbjct: 678 SITGKSIVEQASSPLERRMDAFDEN 702


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 362 PNDNIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQT 478
           PN      EK ++        ST  TQ V + APSN  T
Sbjct: 90  PNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDT 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,383
Number of Sequences: 5004
Number of extensions: 38056
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)