Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30449
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46610| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   5e-07
SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)                 35   0.046
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         29   2.3  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 29   3.0  
SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_39329| Best HMM Match : Metallothio_Pro (HMM E-Value=3.7)           27   9.2  

>SB_46610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
 Frame = +2

Query: 113 MGITRMGDVIAILRHSKQVHENAARDK---VLSNTSVNKVPVAAITGRSTLPQ----PSS 271
           MGIT MGD+IAILRH+K+VH  + R+K     S+ S  K P +   GR T P+      +
Sbjct: 1   MGITVMGDIIAILRHAKEVHAQSEREKAAEAFSSESEVKTP-SRTPGRRTPPELQARKET 59

Query: 272 PASRILEHYTRN 307
           PASR+++ +  N
Sbjct: 60  PASRMVDSWISN 71


>SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)
          Length = 239

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 38  YALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQV 169
           Y   FT++ I+   LL L +  L+D+G+T++G +  IL   KQ+
Sbjct: 162 YCELFTKHDIRGPELLSLTRNDLKDLGVTKVGHIKRILSGVKQL 205


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 8   AGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAI 148
           AGI S   A Y   F +N+I   +L  +    L+  GI  MGD I I
Sbjct: 37  AGIASADIAKYLAIFEQNKIDDAVLPHMTMAQLQSAGIQAMGDRIKI 83


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 8   AGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAI 148
           AGI S   A Y   F +N+I   +L  +    L+  GI  MGD I I
Sbjct: 37  AGIASADIAKYLAIFEQNKIDDAVLPHMTMAQLQSAGIQAMGDRIKI 83


>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 80  LLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAAR 187
           +L+ +K +   + + + GD++ +L+  KQ+HEN AR
Sbjct: 135 VLESSKRFYLVLELAQNGDLLQLLQKKKQLHENEAR 170


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 362  PNDNIDESEKNLKKARLIRFGSTGLT 439
            PND IDE  +NL+ A ++ F S GLT
Sbjct: 2212 PNDGIDEPARNLRSACVLMF-SLGLT 2236


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = +2

Query: 38  YALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHE 175
           Y   F EN+I   +L D+++ +L+D  + ++ + +AIL+  K +++
Sbjct: 471 YVEVFRENQIDGMLLSDMDETFLKD--VFKVENKLAILKLKKAIND 514


>SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 516 LVTDSLLPRRENTVCLLDGASLVTSWVSPV 427
           LVTDS +P  ++T+ + D   LVT    PV
Sbjct: 109 LVTDSTIPVTDSTIPVTDSTILVTDSTIPV 138


>SB_39329| Best HMM Match : Metallothio_Pro (HMM E-Value=3.7)
          Length = 297

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 53  TENRIQSDMLLDLNKEYLRDMGITRMGDVI---AILRHSKQVHENAARDK 193
           ++NR +  ++ + + E LR MG+ + GD +   A    S +  +  ++DK
Sbjct: 20  SQNRCRISLVCNADDEMLRSMGLVKAGDRLNLKAFCESSNKPEKEGSKDK 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,765,727
Number of Sequences: 59808
Number of extensions: 311998
Number of successful extensions: 751
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)