Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30449
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical pr...    63   1e-10

>Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical
           protein F53F8.5 protein.
          Length = 368

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 6/168 (3%)
 Frame = +2

Query: 8   AGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAAR 187
           AGIPS++A  YA +F  NRI  +ML +L+K  L ++G++ +GD + ILR  K       R
Sbjct: 11  AGIPSEIAKKYAKSFATNRITKEMLPELDKSTLSELGVSAIGDQLCILRRIKAAKSAIER 70

Query: 188 DKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEHYTRNXXXXXXXXXXXLKRKAVQPN 367
           +   +     +   AA   R T P     +S     + R            +K     P+
Sbjct: 71  EAEEAIQEEPQSKPAANKARITAPGALLASSSSSSEHRRGKPPPDRHEIYHVK----MPD 126

Query: 368 DNIDESEKNLKKARLIR------FGSTGLTQLVTSEAPSNKQTVFSRL 493
            N   + + L+KA ++R       G+TG+ Q   S +P +K ++ +R+
Sbjct: 127 GNTHRTRQILQKAEVMRQQGLAVRGTTGVRQGGRSVSPIDKSSLAARM 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,459,395
Number of Sequences: 27780
Number of extensions: 221975
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)