Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30449
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15760.1 68414.m01891 expressed protein preedicted by genemar...    31   0.61 
At1g80520.1 68414.m09437 expressed protein                             29   2.5  
At1g10470.1 68414.m01179 two-component responsive regulator / re...    28   3.2  
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put...    27   5.7  
At4g26540.1 68417.m03823 protein kinase family protein Three fal...    27   5.7  
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom...    27   7.5  
At2g21480.1 68415.m02556 protein kinase family protein contains ...    27   7.5  
At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid...    27   7.5  
At5g22320.1 68418.m02604 leucine-rich repeat family protein cont...    27   9.9  

>At1g15760.1 68414.m01891 expressed protein preedicted by
           genemark.hmm; expression supported by MPSS
          Length = 202

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 18/73 (24%), Positives = 41/73 (56%)
 Frame = +2

Query: 38  YALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAARDKVLSNTSVN 217
           Y L+F++N ++ + +   + E+L+ MGI+     + IL+ +++  +N+     L++ S++
Sbjct: 22  YGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARRDRKNS---PPLTSRSIS 78

Query: 218 KVPVAAITGRSTL 256
           +V  A    R  L
Sbjct: 79  RVVTAIKKTRKCL 91


>At1g80520.1 68414.m09437 expressed protein
          Length = 192

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 38  YALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAARDK 193
           Y L+F+ N ++ + +   N E+L+ MG       I+I +H  ++ + A RD+
Sbjct: 20  YGLSFSNNELEYEDIAYFNHEFLQSMG-------ISIAKHRLEILKLARRDR 64


>At1g10470.1 68414.m01179 two-component responsive regulator /
           response regulator 4 (ARR4) identical to responce
           regulator1 GI:3273195 from [Arabidopsis thaliana];
           identical to cDNA ARR4 mRNA for response regulator 4
           GI:3953596
          Length = 259

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 161 KQVHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSP 274
           K++  +  +D  LSN +  K+P  + +  S+LP PS P
Sbjct: 155 KRLRSHLTKDVKLSNGNKRKLPEDSSSVNSSLPPPSPP 192


>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 953

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 371 NIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQTVFSRLGSNE 505
           +ID+  KNL  A +I  GS+G+   VT   PS +     ++ S E
Sbjct: 750 SIDDIVKNLTSANVIGTGSSGVVYRVT--IPSGETLAVKKMWSKE 792


>At4g26540.1 68417.m03823 protein kinase family protein Three false
           introns were added with non-consensus splice sites to
           circumenvent frameshifts likely due to sequencing
           errors; this is extremely unusual and is under
           investigation.
          Length = 1089

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 371 NIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQTVFSRLGSNE 505
           +ID+  KNL  A +I  GS+G+   +T   PS +     ++ S E
Sbjct: 750 SIDDIVKNLTSANVIGTGSSGVVYRIT--IPSGESLAVKKMWSKE 792


>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to SP|P40748
           Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 1027

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 92  NKEYLRDMGITRMGD--VIAILRHSKQVHENAARDKVLSNTSVNKVPVAAITGRSTLP 259
           N+E++  +     GD  V++IL H +Q H++     ++    +    VAA   ++ LP
Sbjct: 43  NEEFVFRISDVDEGDDVVVSILHHEQQDHQSIVSTGLIGKVRIPLTSVAAEENQTLLP 100


>At2g21480.1 68415.m02556 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 871

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 104 LRDMGITR--MGDVIAILRHSKQVHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSPA 277
           L D G+ R  MGDV+  L ++ Q+ E  ++ K  +       PVA      T P  ++ A
Sbjct: 777 LADYGVDRPTMGDVLWNLEYALQLQEAFSQGKAEAEEVETPKPVAVPAAAPTSPAATTAA 836

Query: 278 S 280
           +
Sbjct: 837 A 837


>At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid
           transport family protein contains Pfam profile PF03595:
           C4-dicarboxylate transporter/malic acid transport
           protein
          Length = 556

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 415 NETCFLQVLFTFINIVIRLNCF 350
           + TCF   LF +I++V R+N F
Sbjct: 415 SRTCFFIALFLYISLVARINFF 436


>At5g22320.1 68418.m02604 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 452

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 41  ALTFTENRIQS----DMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAARDKVLSNT 208
           AL   +N I S    D+L DLN   L    I+ +GD ++ L++  ++  +  R K + ++
Sbjct: 111 ALILNDNEISSICKLDLLKDLNSLVLSRNPISEIGDSLSKLKNLSKISLSDCRIKAIGSS 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,814
Number of Sequences: 28952
Number of extensions: 201197
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)