Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30448
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 0.95
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 2.9
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 5.1
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 25 6.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.7
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom... 25 8.9
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 0.95
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 516 NYYIYEKDLSLTSFILNNKIKCNIQIKSQFE 424
N Y+YEK L + + K KCN+ KS+FE
Sbjct: 121 NGYLYEKSRKLEEEMAHLKKKCNV-YKSKFE 150
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/102 (25%), Positives = 47/102 (46%)
Frame = +3
Query: 150 N*I*FTSVHTVH*KCIIIHNKLLIKFHTIYLNRRYIQALIMSDIIQLLC*LEKRNSFLVL 329
N I F HT++ +I + + +T++L + I +LC L ++S
Sbjct: 58 NTIVFFFKHTIYRGTLIQKEEFIDVPNTLFLG---CYTMGFQSCINMLCFLSSQSSPQGW 114
Query: 330 ISTCHMLFIVSKRFCYKKKKIIFSTLLKPDTIRTAILFECYI 455
I+ ++L+I S + +IFST+L T R I F ++
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTIL---TKRAKIEFSTFL 153
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/102 (25%), Positives = 47/102 (46%)
Frame = +3
Query: 150 N*I*FTSVHTVH*KCIIIHNKLLIKFHTIYLNRRYIQALIMSDIIQLLC*LEKRNSFLVL 329
N I F HT++ +I + + +T++L + I +LC L ++S
Sbjct: 58 NTIVFFFKHTIYRGTLIQKEEFIDVPNTLFLG---CYTMGFQSCINMLCFLSSQSSPQGW 114
Query: 330 ISTCHMLFIVSKRFCYKKKKIIFSTLLKPDTIRTAILFECYI 455
I+ ++L+I S + +IFST+L T R I F ++
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTIL---TKRAKIEFSTFL 153
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/102 (25%), Positives = 47/102 (46%)
Frame = +3
Query: 150 N*I*FTSVHTVH*KCIIIHNKLLIKFHTIYLNRRYIQALIMSDIIQLLC*LEKRNSFLVL 329
N I F HT++ +I + + +T++L + I +LC L ++S
Sbjct: 58 NTIVFFFKHTIYRGTLIQKEEFIDVPNTLFLG---CYTMGFQSCINMLCFLSSQSSPQGW 114
Query: 330 ISTCHMLFIVSKRFCYKKKKIIFSTLLKPDTIRTAILFECYI 455
I+ ++L+I S + +IFST+L T R I F ++
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTIL---TKRAKIEFSTFL 153
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/102 (25%), Positives = 47/102 (46%)
Frame = +3
Query: 150 N*I*FTSVHTVH*KCIIIHNKLLIKFHTIYLNRRYIQALIMSDIIQLLC*LEKRNSFLVL 329
N I F HT++ +I + + +T++L + I +LC L ++S
Sbjct: 58 NTIVFFFKHTIYRGTLIQKEEFIDVPNTLFLG---CYTMGFQSCINMLCFLSSQSSPQGW 114
Query: 330 ISTCHMLFIVSKRFCYKKKKIIFSTLLKPDTIRTAILFECYI 455
I+ ++L+I S + +IFST+L T R I F ++
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTIL---TKRAKIEFSTFL 153
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = -1
Query: 456 KCNIQIKSQFEWCLALVTLKILFSFFYNKIFYLL*RAY 343
KC +++ +++ WCL+ ++ FY+ + +L + Y
Sbjct: 411 KCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPY 448
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 312 NSFLVLISTCHMLFIVSKRFCYKKK 386
+SFLV+I C ++ +S FC+ K
Sbjct: 1023 HSFLVIIFACSVILNLSLMFCFGAK 1047
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 492 LSLTSFILNNKIKCNIQIKSQFEWCLALVTLKILFSFFYNKIFYLL 355
L L + + N +K N + + F +CLAL T K + +F IF+ L
Sbjct: 191 LGLVMYAIANLLK-NQYVAATFFFCLAL-TFKQMALYFAPPIFFYL 234
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 240 LNRRYIQALIMSDIIQLLC*LEKRNSFLVLI---STCHMLFIVSKRFCYKKKK 389
+ +RY+ I + I L +EKRNS LI S H I + Y K K
Sbjct: 372 IRKRYLNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLKPK 424
>SPBC31F10.02 |||thioesterase superfamily
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 54 MSFERSPWCDFVGVNIND--VYNNIQI 128
+SF RS W DFV N D V ++IQI
Sbjct: 11 LSFVRSVWQDFVNTNGFDAHVVSDIQI 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,897
Number of Sequences: 5004
Number of extensions: 31109
Number of successful extensions: 69
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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