Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30448
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068719-4|AAC17780.1|  294|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    28   4.6  
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    28   4.6  

>AF068719-4|AAC17780.1|  294|Caenorhabditis elegans Hypothetical
           protein H14N18.2 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 207 NKLLIKFHT---IYLNRRYIQALIMSDIIQL--LC*LEKRNSFLVLISTCHMLFIV 359
           +K  +  HT   ++LN RYI+AL + + + L  +     + SF +L   C +  ++
Sbjct: 173 DKSFLDLHTLMRVFLNSRYIEALYLDESVSLDEILQFSDQKSFAMLFPVCQLTVVL 228


>Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC455.11 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 315 SFLVLISTCHMLFIVSKRFCYKKKKIIFSTLL 410
           SF   ++TC   + V  R  Y    I+FST+L
Sbjct: 161 SFYCSLTTCFQSYAVITRIIYTSTNIVFSTIL 192


>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 372 CYKKKKIIFSTLLKPDTIRTAIL 440
           C K+K+I + T+++ DTIR  I+
Sbjct: 172 CLKRKRINYQTIIRKDTIRRIIV 194


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 372 CYKKKKIIFSTLLKPDTIRTAIL 440
           C K+K+I + T+++ DTIR  I+
Sbjct: 172 CLKRKRINYQTIIRKDTIRRIIV 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,667,942
Number of Sequences: 27780
Number of extensions: 167908
Number of successful extensions: 275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)