Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30447
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   4.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 312 TAIRVLLFRITTRLSKVGLRFRNGLP 235
           T +  L F  ++ L+  GLR  NG+P
Sbjct: 119 TLLNTLTFHTSSNLTVSGLRCVNGIP 144


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 312 TAIRVLLFRITTRLSKVGLRFRNGLP 235
           T +  L F  ++ L+  GLR  NG+P
Sbjct: 119 TLLNTLTFHTSSNLTVSGLRCVNGIP 144


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 259 PSIPQRPSSFSPAPPPQ 209
           P  P    S +P+PPPQ
Sbjct: 218 PDSPNSKKSATPSPPPQ 234


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 247 QRPSSFSPAPPPQHFD 200
           QRP S S +PPP  ++
Sbjct: 271 QRPKSASLSPPPHVYN 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,982
Number of Sequences: 336
Number of extensions: 1954
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)