Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30447
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   2.9  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.9  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.9  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   8.9  

>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 288 RITTRLSKVGLRF-RNGLPRFRQRLRHNTLIWSRRH 184
           R   +L   GL F R G  RFR++  H +L  +RR+
Sbjct: 491 RPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRY 526


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 434  DEELRSLITSLINDLTRAKPFCLGETVGCTVLALSKVLERAPLFECSCLE*LRDLVKLAF 255
            DE     +  ++N +  AKP  +   +G   + +  V+ R PL +    + L+ L    F
Sbjct: 1265 DESSMQTLYPILNRMI-AKPGGVPTKIGSAQVVMLLVIRRGPLVKQFASKLLQSLKSSCF 1323

Query: 254  D-SATAFLVFASA 219
            D +A     FASA
Sbjct: 1324 DRNAAVSDAFASA 1336


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 268 TKSRSYSKQEHSNSGARSKTLERANTVQP 354
           TK+ S+ ++ HS    +SK L + N  QP
Sbjct: 323 TKNVSHEEKSHSVQDDKSKQLLKPNPTQP 351


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 202 DLVAEAQEVGLSVCCSS 152
           D + E  E GLS+CC S
Sbjct: 196 DSICEIVETGLSMCCQS 212


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 214 AEALAKTRKAVAESKANFTKSRSYSKQEHSNSGARSKTLERANTVQPTVSPKQNGLA 384
           AEA A   + +AES  +   + S +  +HS     + +    +   P + P   G A
Sbjct: 89  AEAAAAAARRIAESLQSTKATSSRTSYDHSEGITSTTSASPPSAPAPPLPPSSEGPA 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,332
Number of Sequences: 5004
Number of extensions: 31112
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)