Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30447
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1089 - 25987384-25987611,25988255-25988419,25988607-259886... 31 0.42
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 28 3.9
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 3.9
03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939,441... 28 5.1
07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217... 27 6.8
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 27 6.8
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 27 6.8
06_02_0015 + 10599131-10600248,10601009-10602752 27 8.9
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 27 8.9
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 27 8.9
>12_02_1089 -
25987384-25987611,25988255-25988419,25988607-25988678,
25989275-25989435,25989941-25989968
Length = 217
Score = 31.5 bits (68), Expect = 0.42
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 265 FTKSRSYSKQEHSNSGARSKT--LERANTVQPTVSPKQNGLARVK 393
F S+S K+EHS+S +R K + ++ QP+ SP G + K
Sbjct: 164 FLNSKSDDKEEHSDSSSRDKQDGVAPRDSGQPSTSPSSKGASSAK 208
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 237 PRFRQRLRHNTLIWSRRHRRW 175
P + + LRHN WS RHR W
Sbjct: 610 PLWHRELRHNN--WSTRHREW 628
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +1
Query: 85 YYSIVRVTPLLIMLMVQTNAQPMKNNKLKGXXXXXXXXNQSVVAEALAKTRKAVAESKAN 264
+ S +R T L +Q Q ++ K + EA AK KA AE+K
Sbjct: 1055 FVSSMRCTSLHHFTALQKFLQLLEEKKKRILEKKEAPLKWEQKLEAAAKA-KADAEAKEK 1113
Query: 265 FTKSRSYSKQEHSNSGARS 321
KSR + ++ HS+S + S
Sbjct: 1114 KLKSRKHRRRGHSSSDSES 1132
>03_01_0599 +
4416441-4416549,4416854-4417394,4417476-4417939,
4418361-4418496,4418616-4418687,4418777-4418845,
4418940-4419011,4419101-4419172,4419359-4419416
Length = 530
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 208 HFDLVAEAQEVGLSVCCSSSAERLSGP 128
+F++VAEAQ +SVC + A+ S P
Sbjct: 150 YFEMVAEAQGKTMSVCLARRADTRSSP 176
>07_01_0303 -
2171796-2172611,2173133-2174062,2174659-2175132,
2175569-2175609,2176298-2176337
Length = 766
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 ICREWCDHTAPVITRSLYYSTFIIVLS 100
+CR W + V RSL+Y TF+ +LS
Sbjct: 518 VCRLW-NSKGKVTMRSLFYVTFLAILS 543
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 214 PQHFDLVAEAQEVGLSVCCSSSAERL 137
P DLV E + GL V +SSA+R+
Sbjct: 169 PGALDLVTECKNAGLKVAVASSADRI 194
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 253 IPQRPSSFSPAPPPQHFDLVAEAQEV 176
+P+RP PP +HFDL AE +++
Sbjct: 1852 LPRRPDE--RGPPRRHFDLTAEEEKI 1875
>06_02_0015 + 10599131-10600248,10601009-10602752
Length = 953
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 365 GETVGCTVLALSKVLERAPLFECSCLE*LRDLVKLAFDSATAFLVFA 225
G VG TVL + VL+ L RD++ +A+ SA LVFA
Sbjct: 89 GNRVGVTVLRSAMVLDLFALMGAYAAGVSRDVLAVAYVSALFGLVFA 135
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 99 PSDASFNYAHGPDKRSADEEQQTERPTSCASATKSK 206
P+D HG ++ A + QQT P S A+A +K
Sbjct: 126 PTDVVEAAQHGQRQQQASQSQQTPSPRSYAAAVVNK 161
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 259 PSIPQRPSSFSPAPPPQHFDLVAE 188
PS+P P P PPP +V E
Sbjct: 101 PSLPPPPPPLRPPPPPARLGIVGE 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,097
Number of Sequences: 37544
Number of extensions: 219222
Number of successful extensions: 1011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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