Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30447
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     37   0.011
SB_54975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_6237| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 22/85 (25%), Positives = 39/85 (45%)
 Frame = +1

Query: 91  SIVRVTPLLIMLMVQTNAQPMKNNKLKGXXXXXXXXNQSVVAEALAKTRKAVAESKANFT 270
           S+VR   +  +L+  T   P+  + L                 A+ +TR+A+ + + +FT
Sbjct: 596 SVVRQRDMYRVLLANTGQSPIPLSGLDDASLILTPSTPDKSMAAMEETREALKQMQKHFT 655

Query: 271 KSRSYSKQEHSNSGARSKTLERANT 345
             R+  KQE  N  +R + L+  NT
Sbjct: 656 DFRAEKKQEEVNMRSRYEDLQSENT 680


>SB_54975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 336 SFQSFRTRTAIRVLLFRITTRLSKVGLRFRNGLPRFRQRLRHNTLIWSRR 187
           S +  R     +V    +T+ L+       N L +FRQRL+HN L+   R
Sbjct: 23  SHEQIRKLMQSKVKTAELTSDLTAEAKNLVNILHKFRQRLQHNALLEKAR 72


>SB_6237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +2

Query: 353 RQSRPNKMVWPV-LSHLLET 409
           R  R NK+VWPV +SHL+E+
Sbjct: 43  RDPRTNKIVWPVDISHLVES 62


>SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 354 RLHCVSSFQSFRTRTAIRVLLFRITTRLSKVGLRFRNGLPRFRQRLRHNTLIWSR 190
           RLH  S  QS  TRT    +L +    +S +    +NG  R    L HN+ I S+
Sbjct: 57  RLHSASQPQSNLTRT--EPVLKQCRPFMSTIQCNSKNGATRIDNSLTHNSTIASK 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,787
Number of Sequences: 59808
Number of extensions: 251179
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)