Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30447
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +1

Query: 139 NAQPMKNNKLKGXXXXXXXXNQSVVAEALAKTRKAVAESKANFTKSRSYSKQEHSNSGAR 318
           NA P  NN +K            +   A  K +    ESK NF  +R+      S++G  
Sbjct: 42  NATPSMNNPVKDTQGGEKQMESML---AYIKQKGWAGESKPNFVMNRNVIGAIPSSTGVE 98

Query: 319 SKTLERANTVQPTV-SPKQNG 378
           +  + + N VQ  V +PK+ G
Sbjct: 99  NFIVFKTNDVQVIVKTPKEKG 119


>Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical
           protein M05B5.3 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 247 QRPSSFSPAPPPQHFDLVAEAQEVGLSVCCSSSAERLSGP 128
           Q+P S +PAP P  F    E +     V  S ++ +++ P
Sbjct: 326 QQPKSKAPAPRPSIFPYFVEPKAPSSDVSTSKASSKMTNP 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,162
Number of Sequences: 27780
Number of extensions: 179218
Number of successful extensions: 668
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)