Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30447
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36250.1 68418.m04373 protein phosphatase 2C, putative / PP2C...    31   0.46 
At5g23650.1 68418.m02773 myb family transcription factor contain...    28   4.3  
At2g25735.1 68415.m03085 expressed protein                             28   4.3  
At1g10360.1 68414.m01167 glutathione S-transferase, putative sim...    28   4.3  
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family...    27   9.9  

>At5g36250.1 68418.m04373 protein phosphatase 2C, putative / PP2C,
           putative
          Length = 448

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 250 ESKANFTKSRSYSKQEHSNSGARSKTLERANTVQP---TVSPKQNGLARV 390
           +S+ N   + S+SK++H N+G      + A++  P   T SP+ NG+ R+
Sbjct: 385 DSEPNRLSTASFSKEKHINNGVTEPEPDTASSSTPDSGTGSPELNGVNRI 434


>At5g23650.1 68418.m02773 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 337

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 244 VAESKANFTKSRSYSKQEHSNSGA-RSKTLERANTVQPTV 360
           +AE+K+  TK R  + Q+ +N+GA  S T     T+QP++
Sbjct: 186 IAENKSISTKQRPITWQKINNNGATASNTQANQTTLQPSL 225


>At2g25735.1 68415.m03085 expressed protein
          Length = 119

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 93  YCPSDASFNYAHGPDKRSADEEQQTERPTSCASATKSK 206
           Y P D S N+  GP     DE +   R  SC  A  ++
Sbjct: 73  YEPCDYSLNFDQGPGWHDHDEPENLSRSFSCRFADPTR 110


>At1g10360.1 68414.m01167 glutathione S-transferase, putative
           similar to glutathione S-transferase
           (sp|Q03666|GTX4_TOBAC); similar to EST gb|H36275
           gb:AB039930.
          Length = 227

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 431 EELRSLITSLINDLTRAKPFCLGETVGCTVLALSKVL 321
           EE   L+    ND ++ KPF  G+ +G   +AL   L
Sbjct: 132 EERTKLLEKAFNDCSQGKPFFNGDHIGYLDIALGSFL 168


>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
           protein
          Length = 242

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 262 WPSIPQRPSSFSPAPPPQHFDLVAEAQEVGLSVCCSSSA 146
           WP  P+  S+FSP P P     V    + G+    S+ A
Sbjct: 156 WPLGPREGSAFSPGPSPSEITSVTVPGKDGVPFINSNPA 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,725
Number of Sequences: 28952
Number of extensions: 167262
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)