Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30446
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 29 2.0
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 4.6
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 4.6
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 6.0
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 27 6.0
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 27 8.0
U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchanger... 27 8.0
U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchanger... 27 8.0
U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchanger... 27 8.0
AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calciu... 27 8.0
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPT 367
TTT P T KK ++R+ PKT + + +T T APT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPT 236
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 175 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 270
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 175 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 270
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 175 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 270
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 175 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 270
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 239 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 370
+ TTT +P T S KK + T P K S+ +T T +P V
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVV 416
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 382 VDYTADENGFVADGAHIPK*I*SRSIF*GYFRKKKKKNSRGG 507
+D D+N F +PK + IF YF KKKKN G
Sbjct: 257 MDQYDDDNFFSQTRHFLPKNLKILVIFGNYFPMKKKKNQLSG 298
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 382 VDYTADENGFVADGAHIPK*I*SRSIF*GYFRKKKKKNSRGG 507
+D D+N F +PK + IF YF KKKKN G
Sbjct: 205 MDQYDDDNFFSQTRHFLPKNLKILVIFGNYFPMKKKKNQLSG 246
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 202 YGIIRY--DNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKV 336
YGII+ D AP+G+ + I AG ++NV E+ G+ V
Sbjct: 178 YGIIKALPDGKSAPDGHELTVDYWEVIGKAPAGGIDNVLNESAGVDV 224
>U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformd protein.
Length = 950
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 358 GPDGVTYRVDYTADENGFVADGAHIP 435
GPDG+T VDY ++ A +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchangers
protein 2, isoforma protein.
Length = 975
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 358 GPDGVTYRVDYTADENGFVADGAHIP 435
GPDG+T VDY ++ A +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformb protein.
Length = 925
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 358 GPDGVTYRVDYTADENGFVADGAHIP 435
GPDG+T VDY ++ A +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
>AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 925
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 358 GPDGVTYRVDYTADENGFVADGAHIP 435
GPDG+T VDY ++ A +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,994,943
Number of Sequences: 27780
Number of extensions: 177616
Number of successful extensions: 600
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -