Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30446
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    28   4.3  
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    28   4.3  
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    28   4.3  
At1g73990.1 68414.m08569 peptidase U7 family protein similar to ...    27   7.5  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    27   7.5  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    27   9.9  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 452 DQYFKVILEKKKKKTRG 502
           D+YF  + EKKKKKT G
Sbjct: 158 DKYFGKVAEKKKKKTEG 174


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 452 DQYFKVILEKKKKKTRG 502
           D+YF  + EKKKKKT G
Sbjct: 158 DKYFGKVAEKKKKKTEG 174


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 452 DQYFKVILEKKKKKTRG 502
           D+YF  + EKKKKKT G
Sbjct: 158 DKYFGKVAEKKKKKTEG 174


>At1g73990.1 68414.m08569 peptidase U7 family protein similar to
           protease IV GB:AAA57008 from [Escherichia coli];
           contains Pfam profile PF01343: Peptidase family U7
          Length = 677

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 208 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVG 360
           +I   +DVA  G +Y+    N I+AE      ++G       +   YE +G
Sbjct: 450 VIASMSDVAASGGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIG 500


>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 262  TENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 387
            TE ++L E+  K+E +  E EG+K     E    D  T + D
Sbjct: 966  TETQVLVEDTQKIEALTEEVEGLKANLEQEKQRADDATRKFD 1007


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -1

Query: 168 HLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 22
           H  G  CG  H  G   GC   G G    G G + G + S   V A  L
Sbjct: 781 HHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -1

Query: 444 DLLR---DVSSVSNETVFVS-SVVYSVGDTVGANVFVESLDLDAFVFGANVLDLAGFFSE 277
           D+LR   D   +S++ VF+  +  +  GD       VES D +A    + + DLA  F  
Sbjct: 445 DVLRVSYDELGLSHKDVFLDVACFFRSGDEYYVRCLVESCDTEAIDTVSEIKDLASKFLI 504

Query: 276 NLVLGLVQV 250
           N+  G V++
Sbjct: 505 NISGGRVEM 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,552,323
Number of Sequences: 28952
Number of extensions: 171114
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)