Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30445
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    40   0.034
UniRef50_A0DRV3 Cluster: Chromosome undetermined scaffold_603, w...    35   0.96 
UniRef50_UPI0000DA49EC Cluster: PREDICTED: similar to guanine nu...    33   5.1  
UniRef50_Q15751 Cluster: HECT domain and RCC1-like domain-contai...    33   5.1  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
          Bombyx mori|Rep: Putative uncharacterized protein -
          Bombyx mori (Silk moth)
          Length = 77

 Score = 39.9 bits (89), Expect = 0.034
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = -2

Query: 62 FIKILADPADFVVPQSINKR 3
          F+ ILADPADFVVPQSINKR
Sbjct: 18 FMIILADPADFVVPQSINKR 37


>UniRef50_A0DRV3 Cluster: Chromosome undetermined scaffold_603,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_603,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 541

 Score = 35.1 bits (77), Expect = 0.96
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +2

Query: 176 FITILRFNGMDLSLNHSLLLRVNESQIRSPI*FVSFVNFEHNKLMSDQTR 325
           F TI R   +D+SL  S L+ VN+ Q    I  +  +NF +N+  S+Q R
Sbjct: 290 FCTIDRIQQIDISLTDSQLILVNKCQEEIKIQQIDLLNFHYNQYNSEQYR 339


>UniRef50_UPI0000DA49EC Cluster: PREDICTED: similar to guanine
            nucleotide exchange factor p532; n=1; Rattus
            norvegicus|Rep: PREDICTED: similar to guanine nucleotide
            exchange factor p532 - Rattus norvegicus
          Length = 4860

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -1

Query: 369  VLAVLS-TYQVSLNIALV*SLINLLCSKFTKLTNQIGLLICDSF 241
            +LA+ + TY   L+  +V SL++LLCS+   L +Q G+L   SF
Sbjct: 1821 ILAITTGTYADKLSPKVVQSLLDLLCSQLKNLLSQTGVLFMASF 1864


>UniRef50_Q15751 Cluster: HECT domain and RCC1-like domain-containing
            protein 1; n=38; Eukaryota|Rep: HECT domain and RCC1-like
            domain-containing protein 1 - Homo sapiens (Human)
          Length = 4861

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 369  VLAVLS-TYQVSLNIALV*SLINLLCSKFTKLTNQIGLLICDSFTRSRSE 223
            +LA+ + TY   L+  +V SL++LLCS+   L +Q G+L   SF     E
Sbjct: 1821 ILAITTGTYADKLSPKVVQSLLDLLCSQLKNLLSQTGVLHMASFGEGEQE 1870


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,657,541
Number of Sequences: 1657284
Number of extensions: 8576084
Number of successful extensions: 15294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15293
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)