Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30445
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    27   8.0  

>AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical
           protein R05C11.2 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 514 NERSKKKASNFIHKSRRIDYGNFS 443
           N +   KAS    KS  +DYGNFS
Sbjct: 85  NRKVSYKASRLSRKSSELDYGNFS 108


>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 207 SIPLNLNMVIKYSFLCPPKYKCP 139
           S+ ++L  V  +SF  PP+Y CP
Sbjct: 2   SLNMSLYYVFTHSFSLPPEYDCP 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,800,513
Number of Sequences: 27780
Number of extensions: 215073
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)