Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30435
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   2.2  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   3.8  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   5.1  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.1  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   6.7  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 197 AKMRQILMRIYYILSTFVKIHRFLIEINMM 286
           A M +I M  YY++   + I  FLI IN M
Sbjct: 214 ANMDRIPMNPYYLIKDLITIFIFLIGINYM 243


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 464 TIETSLVLIFNFKQMKIGKKKLKY*TNLF 378
           T+E+SL  I N +   + K++++Y  NLF
Sbjct: 352 TLESSLTQIRNERDSLVAKQQMQYTNNLF 380


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 105 KNGICSILVNQTFFCNELH 161
           +NG C++L   + F NELH
Sbjct: 254 QNGFCAVLSTLSTFSNELH 272


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 105 KNGICSILVNQTFFCNELH 161
           +NG C++L   + F NELH
Sbjct: 254 QNGFCAVLSTLSTFSNELH 272


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 360 YLNLIQTLLISLINGYYYYIH 298
           Y +LI T LI+  NGY  +IH
Sbjct: 459 YASLIFTGLITFFNGYNAFIH 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,016
Number of Sequences: 5004
Number of extensions: 34978
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)