Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30435
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2...    28   4.3  
At5g46560.1 68418.m05733 expressed protein                             27   7.5  
At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein ...    27   7.5  

>At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2)
           plant glutamate receptor family, PMID:11379626
          Length = 920

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 317 PLIKEIKRV*IKFKYLKFIRQINWFSTLIFFY 412
           PL  E+KR   KF +LK +    W +TL+FF+
Sbjct: 563 PLKDEVKRD--KFSFLKPLSIELWLTTLVFFF 592


>At5g46560.1 68418.m05733 expressed protein 
          Length = 378

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 324 INGYYYYIHIQCNIILISMRNLCI 253
           ING  Y   +QCN+   + RNLC+
Sbjct: 97  INGECYQGKLQCNLGYKNQRNLCV 120


>At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein low
           similarity to SP|P03958 Adenosine deaminase (EC 3.5.4.4)
           (Adenosine aminohydrolase) {Mus musculus}; contains Pfam
           profile PF00962: Adenosine/AMP deaminase
          Length = 355

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 400 NFFLPIFICLKLNIKTKDVSIV*GELQM*HHY*SLYYIK 516
           +F +P+ ICL  NI TK +S +  ++   HH+  LY  K
Sbjct: 254 SFRIPVEICLTSNIVTKSISSI--DI---HHFADLYNAK 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,927,033
Number of Sequences: 28952
Number of extensions: 151542
Number of successful extensions: 222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)