Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30434
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    29   2.2  
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727...    27   6.8  
03_06_0493 + 34315867-34316124,34316194-34316256,34317346-343176...    27   8.9  

>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 234 VPKSTVNGSGGSVMTCLGRSRLFTIQS 314
           VP+    G GG++M  +GRSR + ++S
Sbjct: 121 VPQEAAVGGGGAMMAVVGRSRQYVLRS 147


>08_02_0825 -
           21570628-21570715,21571436-21571812,21572364-21572755,
           21573943-21574311,21574395-21574580,21574709-21574845,
           21575030-21575089,21575206-21575277,21575399-21575542,
           21575702-21575773,21575928-21576060,21576157-21576247
          Length = 706

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 207 PPDPLKVLEVPKSTVNGSGGSVMTCLGRSRLFTIQSTGSGMSKF 338
           P   L +LE  +   +G GG VM  LG  R F ++   +    F
Sbjct: 291 PSSVLGILEKGRDVEDGGGGEVMARLGNVRQFGLRELHAATDGF 334


>03_06_0493 +
           34315867-34316124,34316194-34316256,34317346-34317604,
           34317710-34317819
          Length = 229

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 23  LETHCG*TQWLQVVCMNSAPVAGGPIV 103
           L+  C    WLQV C N  P+  G ++
Sbjct: 75  LDLGCAPGAWLQVACQNLGPLEKGGVI 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,905
Number of Sequences: 37544
Number of extensions: 251683
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)