Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30434
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon g...    27   8.0  
AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.      27   8.0  
AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
          protein F02E8.5 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 57 WSHCVHPQCVSRDLFL 10
          WS CVHP CV+  +F+
Sbjct: 12 WSRCVHPSCVAWVIFI 27


>U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon gene
           protein 2 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 186 PKHVILDPPDPLKVLEVPKSTVNGSGGSVMTCL 284
           P  V +D  D +K  EV K    G  G++MTCL
Sbjct: 74  PYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCL 106


>AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 186 PKHVILDPPDPLKVLEVPKSTVNGSGGSVMTCL 284
           P  V +D  D +K  EV K    G  G++MTCL
Sbjct: 74  PYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCL 106


>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 156 LRRSYNTKLSPKHVILDPPDPLKVLEVPK--STVNGSGGSVMTC 281
           L+R Y T + PK+  LD  D +K  ++PK  +T+ G    ++ C
Sbjct: 69  LKRCYETGMDPKYFQLD-RDKIKPRQIPKTVATLVGRPSYIVHC 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,918,852
Number of Sequences: 27780
Number of extensions: 211210
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)