Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30434
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot...    30   0.80 
At5g57630.1 68418.m07200 CBL-interacting protein kinase 21, puta...    27   5.7  
At5g55210.1 68418.m06882 expressed protein similar to unknown pr...    27   5.7  
At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot...    27   7.5  

>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 224

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 23  LETHCG*TQWLQVVCMNSAPVAGGPIVFFSHVSRLKV 133
           L+  C    WLQV C +  P+  G IV    + ++KV
Sbjct: 44  LDLGCAPGAWLQVACQSLGPLRSGGIVVGMDIKKVKV 80


>At5g57630.1 68418.m07200 CBL-interacting protein kinase 21,
           putative (CIPK21) identical to CBL-interacting protein
           kinase 21 [Arabidopsis thaliana] gi|14334390|gb|AAK59696
          Length = 416

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 159 RRSYNTKLSPKHVILDPPDPLKVLEVPKSTVNGSGGSVMTCLG 287
           R  Y+  L P++++LD    LKV +   S V  SG  + T  G
Sbjct: 128 RGVYHRDLKPQNLLLDSKGNLKVSDFGLSAVPKSGDMLSTACG 170


>At5g55210.1 68418.m06882 expressed protein similar to unknown
           protein (pir||T04913)
          Length = 168

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 159 RRSYNTKLSPKHVILDPPDPLKVLEVPKSTVNGSG 263
           R + N   SP H++L    PL    V  S  NGSG
Sbjct: 54  RNNSNNSNSPHHLLLHKWTPLTSATVTASDANGSG 88


>At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein
           / VPS11 family protein similar to Vacuolar protein
           sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo
           sapiens]; similar to Vacuolar biogenesis protein END1
           (PEP5 protein) (Vacuolar protein sorting 11)
           (Swiss-Prot:P12868) [Saccharomyces cerevisiae]
          Length = 932

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 219 LKVLEVPKSTVNGSGGSVMTCLGRSRLFTIQSTGSGMSKF 338
           LKV ++ K    G+  S   C+G  R+FT Q   + ++ F
Sbjct: 95  LKVFDLDKVQEEGTSSSAPECIGILRIFTNQFPEAKITSF 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,133,043
Number of Sequences: 28952
Number of extensions: 196111
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)