Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30430
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 210 7e-55
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 60 8e-10
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 30 0.98
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 29 1.7
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 28 4.0
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 210 bits (512), Expect = 7e-55
Identities = 96/147 (65%), Positives = 122/147 (82%), Gaps = 2/147 (1%)
Frame = +1
Query: 73 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKF-NAP 249
MD EYD +VLGTGLKEC+LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL +L+ F
Sbjct: 1 MDAEYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCASLHPLNQLYETFGRTD 60
Query: 250 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV-TRYLEFKSIEGSYVYKGGKISKV 426
P ++ G+ RD+NVDLIPKFLMA+G LVK+L+HTGV T+Y+ FK IEGS+VY+GG + KV
Sbjct: 61 FPGDSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKV 120
Query: 427 PVDQKEALASDLMGMFEKRRFRNFLIY 507
P ++KEAL S LMG+FEKRRFRNFLI+
Sbjct: 121 PANEKEALNSSLMGIFEKRRFRNFLIF 147
>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 105 bits (252), Expect = 2e-23
Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
Frame = +1
Query: 118 ECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDE----TYGRGRDW 285
ECILSG LSV+GKKVLH+D K+YGGE+AS+TPL +LF KFN P E +GR RDW
Sbjct: 19 ECILSGALSVAGKKVLHMDSQKFYGGETASLTPLSQLFDKFNRSMPKEEIEKRFGRERDW 78
Query: 286 NVDLIPKFLMANGL 327
NVDL+PKF+MA G+
Sbjct: 79 NVDLVPKFIMAGGI 92
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 60.5 bits (140), Expect = 8e-10
Identities = 27/80 (33%), Positives = 44/80 (55%)
Frame = +1
Query: 277 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 456
R +N+DL PK L++ G LV+ LI ++ Y EFK++ + G + VP + + +S
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCSRSDVFSS 382
Query: 457 DLMGMFEKRRFRNFLIYVQD 516
L+ + EKR FL + D
Sbjct: 383 KLIPVIEKRLLMKFLTFCLD 402
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 82 EYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 213
EYD IVLGTGL E +++ LS G KVLH+DRN YY + AS T
Sbjct: 7 EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFT 50
>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 79 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 195
+E D +V+G+G+ + +L+ +GKK+L ++++ GG
Sbjct: 84 DEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGG 122
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 332 SNCLFTRASPGTWSLSPSKEVMFTKVEKSPKYL 430
SNC+ T+ S T L P+K+V+ + + PK L
Sbjct: 693 SNCINTKDSDQTTKLRPNKDVIMDEPHRDPKQL 725
>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 301 ESSQRSSLDLDRMFHQV-PVR*T*RTAPLTG*LTQIHHRSTYCDRCAKPSS 152
+++Q + D+D + P++ T +P TG + +H ++T DR A+P+S
Sbjct: 260 DNTQANVTDIDEAIAKARPIKITEDASPTTG-TSGVHQKATVIDRAARPAS 309
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 361 RYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQD 516
R+L+F+ + S + KG K+P + E +A ++ + +R F L Y+ D
Sbjct: 368 RWLQFEKVVASLIEKGFNSIKLP--EAERIAEEVCQIDNEREFLTLLNYLHD 417
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 495 VAETPLLKHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVP 361
V++T L ++ IR I+ YFG+ + VNI D K QVP
Sbjct: 735 VSDTSLPEYTSVIRN-----IEEYFGNLTASVNILEVDLTKCQVP 774
>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 102 GNRLKRMYFKRHVVGFWEEGFAHRSQ*VLRW*ICVNY 212
GNR R+ K ++ +E+GF RW IC +
Sbjct: 80 GNRSVRVILKTYLCVSYEQGFCKSGNSCTRWHICKGF 116
>SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 182 LLRSMCKTFFPETDNMPLKIHSFKPVPRTITSYS 81
L+ C+ PETDN PL ++ P+ I +YS
Sbjct: 23 LIIDSCRIRLPETDNRPLYVNRL-PLGNNIFAYS 55
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 82 EYDVIVLGTGLKECILSGMLSVSGK-KVLHID 174
+YD I+ G G CIL+ L+ G+ +VL ++
Sbjct: 10 DYDFIIAGGGTAGCILANRLTADGRHRVLMLE 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,181,640
Number of Sequences: 59808
Number of extensions: 337487
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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