Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30430
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 190 4e-49
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 188 2e-48
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ... 99 9e-22
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 52 3e-07
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 33 0.11
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 30 1.1
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 29 2.5
At5g24155.1 68418.m02841 squalene monooxygenase, putative / squa... 28 3.2
At1g79020.1 68414.m09214 transcription factor-related similar to... 28 3.2
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 28 4.3
At4g36070.1 68417.m05135 calcium-dependent protein kinase family... 28 4.3
At4g31650.1 68417.m04495 transcriptional factor B3 family protei... 27 7.5
At3g62010.1 68416.m06964 expressed protein 27 7.5
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi... 27 7.5
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 190 bits (464), Expect = 4e-49
Identities = 92/149 (61%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Frame = +1
Query: 73 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 252
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 253 PDETY-GRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 429
+ G RD+NVD++PKF+MANG LV++LIHT VT+YL FK+++GSYV+ GK+ KVP
Sbjct: 60 KAPAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVP 119
Query: 430 VDQKEALASDLMGMFEKRRFRNFLIYVQD 516
EAL S LMG+FEKRR F YVQ+
Sbjct: 120 ATPMEALKSPLMGIFEKRRAGKFFSYVQE 148
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 188 bits (458), Expect = 2e-48
Identities = 93/150 (62%), Positives = 113/150 (75%), Gaps = 2/150 (1%)
Frame = +1
Query: 73 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP- 249
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 250 -APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 426
AP E G RD+NVD++PKF+M NG LV+ LIHT VT+YL FK+++GSYV+ GK+ KV
Sbjct: 60 KAP-EHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKV 118
Query: 427 PVDQKEALASDLMGMFEKRRFRNFLIYVQD 516
P EAL S LMG+FEKRR F +VQ+
Sbjct: 119 PATPMEALKSSLMGIFEKRRAGKFFSFVQE 148
>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
strong similarity to GDP dissociation inhibitor protein
OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
PF00996: GDP dissociation inhibitor
Length = 365
Score = 99 bits (238), Expect = 9e-22
Identities = 47/68 (69%), Positives = 54/68 (79%)
Frame = +1
Query: 313 MANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFR 492
MANGLLV+ LIHT VT+YL FK+++GS+VYK GKI KVP EAL S LMG+FEKRR R
Sbjct: 1 MANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRAR 60
Query: 493 NFLIYVQD 516
F IYVQD
Sbjct: 61 KFFIYVQD 68
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 IELIFYTIIMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT-PLE 222
I++ Y + YD+IV+GTG+ E +L+ S SG VLH+D N +YG AS++ P
Sbjct: 2 IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61
Query: 223 ELFAKFNAPAP 255
F N+ +P
Sbjct: 62 TSFLHSNSVSP 72
Score = 42.7 bits (96), Expect = 1e-04
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +1
Query: 277 RDWNVDLI-PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-YKGGKISKVPVDQKEAL 450
R +NVDL P+ + + L++ +G Y+EFKSI+ S+V G++ VP D + A+
Sbjct: 118 RRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVP-DSRAAI 176
Query: 451 ASD-LMGMFEKRRFRNFLIYVQ 513
D + + EK + F VQ
Sbjct: 177 FKDKSLTLLEKNQLMKFFKLVQ 198
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 70 IMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 210
+M + D +V+G+G + +G+L+ +G KVL I+ YY S+
Sbjct: 219 VMKIQCDAVVVGSGSGGGVAAGVLAKAGYKVLVIESGNYYARSKLSL 265
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 88 DVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETY 267
DV+V+G+G + + +L+ SG KV+ +++ Y+ TP E F P D+ Y
Sbjct: 234 DVVVVGSGSGGGVAASVLAKSGLKVVVLEKGSYF-------TPSEH--RPFEGPGLDKLY 284
Query: 268 GRG 276
G
Sbjct: 285 ENG 287
>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
carotenoid isomerase from Lycopersicon esculentum
[gi:19550437]; contains Pfam profile: PF02032 Phytoene
dehydrogenase related enzyme
Length = 595
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 85 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 201
YD IV+G+G+ + + L+V +VL +++ GG S
Sbjct: 78 YDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSS 116
>At5g24155.1 68418.m02841 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2)
Length = 121
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 76 DEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 180
D DVI++G G+ L+ L+ G++VL I+R+
Sbjct: 45 DSAADVIIVGAGVGGSALAYSLAKDGRRVLAIERD 79
>At1g79020.1 68414.m09214 transcription factor-related similar to
enhancer of polycomb (GI:3757890) [Drosophila
melanogaster]; similar to enhancer of polycomb
(GI:11907923) [Homo sapiens]
Length = 453
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 513 LNVD*EVAETPLLKHAHKIRRKSFFLIDRYFGDFS-TFVNITSF 385
+ VD EVA P K A +I F ++D Y D+S TF S+
Sbjct: 47 VEVDNEVAPVPSKKPASEIPTPQFVIVDTYERDYSPTFGQPASY 90
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 142 SVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 321
++ G K H + K GG S+S++ E++ + + + RG D N+ IP+F M N
Sbjct: 162 ALGGHKRCHYE-GKNGGGVSSSVSNSEDVGSTSHVSSGH----RGFDLNIPPIPEFSMVN 216
Query: 322 G 324
G
Sbjct: 217 G 217
>At4g36070.1 68417.m05135 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 536
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 316 ANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVD 435
A + KLL+ R +++ S+V +GG+ S+VP+D
Sbjct: 301 AKDFVKKLLVKEPRARLTAAQALSHSWVKEGGEASEVPID 340
>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 493
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 64 TIIMDEEYDVIVLGTGLKE 120
T++MD+ Y +VLG+GL+E
Sbjct: 439 TLLMDKRYTRMVLGSGLRE 457
>At3g62010.1 68416.m06964 expressed protein
Length = 1254
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 100 LGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGR 279
L T LKE IL+ + G+ +LH + +S I E + + N P E Y +
Sbjct: 989 LETRLKEDILAEVRETGGRMLLHREEYSPASNQSRVIGYWENIQPE-NVKTPAEVYAALK 1047
Query: 280 DWNVDL 297
D N ++
Sbjct: 1048 DENYNI 1053
>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 721
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 178 NKYYGGESASITPLEELFAKFNAPAPD 258
N +GGE I+ LEEL A PA D
Sbjct: 621 NMEFGGEVEEISSLEELKAALTRPASD 647
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,343,543
Number of Sequences: 28952
Number of extensions: 244477
Number of successful extensions: 693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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