Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30427
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 30 0.24
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 30 0.24
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 29 0.55
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 28 0.95
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 1.7
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 5.1
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 5.1
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 25 6.7
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 25 6.7
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 25 8.9
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 25 8.9
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 217 IDHNLITRNHDKCRVSEFYDNVRTLKTVLTVD-CPWLNFESNRTLAQHM 360
I + L+ H KC ++Y+ T + +D C FE+N++L+QHM
Sbjct: 31 IFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHM 79
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.9 bits (64), Expect = 0.24
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Frame = +1
Query: 109 DHLAANSKCIPGRGQIPSQYEIPVFQFEIPYFNATYIDHNLITRNHDKCRVSEFY--DNV 282
+ + + +K I G S Y + +FQ + P F + HD C VS Y D
Sbjct: 186 ERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIA 245
Query: 283 RTL-KTVLTVDCPWLNFESNRTLAQHMSFKE 372
L + +L D L F AQ S +E
Sbjct: 246 HALDRDILERDEIVLQFPYTEAAAQEKSQEE 276
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 0.55
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 237 GNEIMVDVGGVEVWYFKLEHRYLVLR 160
G+E++V G EVW+F +E R +V R
Sbjct: 361 GSEMLVLSYGAEVWHFNVEQRSVVRR 386
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 27.9 bits (59), Expect = 0.95
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 372 FLERHVLSQGPIGFKVQPRTVDG 304
F+ERH+++ PI + + +T+DG
Sbjct: 122 FVERHIITSSPIEWNNEYKTIDG 144
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 61 SPIYRPCFLDDYKCISDHLAANSKCIPGRGQIPS 162
+P Y P FL+ SD + + +P RG I S
Sbjct: 1362 TPSYTPSFLEGSPVFSDEILNRGEYMPHRGSISS 1395
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 160 SQYEIPVFQFEIPYFN--ATYIDHNLITRNHDKCRVSEF 270
S Y + + +F F+ +T D NL +RN DK + F
Sbjct: 209 SNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYF 247
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 256 RVSEFYDNVRTLKTVL-TVDC 315
R+SE Y+ +R + TVL T+DC
Sbjct: 690 RISEHYNELRNVTTVLGTLDC 710
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 74 GPASWTITNASPTTW 118
G A W IT A+P+ W
Sbjct: 272 GDAEWNITGAAPSEW 286
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 111 PPGRELEMYPGQRADPLAVRDTGVPV 188
PP + YP PLA++ G P+
Sbjct: 407 PPQAQFSPYPAVAPSPLALQTRGAPI 432
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 172 SRTARGSALCPGYISSSRPGGRRCICNRPRSRACRS 65
S A G+ L PG + RRCI NR R CR+
Sbjct: 330 SEYALGNLLAPGAFA------RRCIMNRLRMLKCRT 359
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 136 YISSSRPGGRRCICNRPRSRAC 71
+++ SRP G C+ R AC
Sbjct: 165 FVTESRPSGSGCLMTRTLKNAC 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,424
Number of Sequences: 5004
Number of extensions: 40023
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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