Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30427
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794...    29   2.9  
08_01_0876 - 8598664-8599374                                           28   3.9  
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    28   3.9  
06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648...    27   6.8  
03_02_0915 + 12360079-12360095,12360225-12361353                       27   6.8  
12_01_0046 - 373974-374188,374298-374580,374698-374764,375705-37...    27   8.9  
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367...    27   8.9  
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867...    27   8.9  

>01_01_1003 -
           7939376-7939414,7939464-7939568,7939757-7939872,
           7941494-7942760
          Length = 508

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 239 RVMRLWSM*VALKYGISNWNTGISYCE 159
           R  R W++  AL  GISNW+  I+  E
Sbjct: 409 RFTRAWTLPRALSSGISNWSNAINLAE 435


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +2

Query: 68  STGPASWTITNASPT---TWPRTRNVSRAEGRSPR----STRYRC 181
           ++GP  WT+  A+P    T P++R   R   RSPR    + R RC
Sbjct: 152 ASGPRRWTMDGAAPLLPETSPKSRRGRRGGRRSPRRGPRTRRRRC 196


>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 211 TYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 339
           TY+   +I  NH   R+ EF    + L     ++C W+    N
Sbjct: 139 TYVIPGIINYNHS--RIDEFIKKAQDLLDPTVLECAWMELSEN 179


>06_03_1343 -
           29463880-29464054,29464460-29464611,29464734-29464889,
           29465010-29465316,29465411-29465527,29465600-29465934
          Length = 413

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 224 WSM*VALKYGISNWNTGISYCEGICPLPGIHFEFAA 117
           W     L+YG+  WN G+    G C L G +    A
Sbjct: 219 WLTSAMLQYGLETWNLGVICLIGNCFLMGAYLVIQA 254


>03_02_0915 + 12360079-12360095,12360225-12361353
          Length = 381

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 79  CFLDDY--KCISDHLAANSKCIPG 144
           C  D +  +CI DH+AA S+C  G
Sbjct: 190 CCFDSFCDRCIRDHIAAKSRCACG 213


>12_01_0046 -
           373974-374188,374298-374580,374698-374764,375705-375889
          Length = 249

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 178 PVSRTARGSALCPGYISSSRPGGRRCICNRPRSR 77
           P+ +  +  A C G++    P GR+ +C   + R
Sbjct: 181 PLGQYRKSCAFCRGHLDILHPMGRKFVCGNDKDR 214


>06_03_1325 -
           29334401-29334859,29335163-29335857,29336538-29336750,
           29338791-29339472,29339781-29340020
          Length = 762

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 181 TPVSRTARGSALCP-GYISSSRPGGRRCICNRPRSRACRS 65
           T +   A G+  CP G I S+ PGG  C C     ++ +S
Sbjct: 307 TDIDVCAPGNDGCPDGMICSNFPGGHNCSCPEGEHKSNKS 346


>03_02_0463 -
           8673313-8673639,8674040-8674126,8674710-8674790,
           8674896-8675048,8675129-8675185,8675293-8675569,
           8675634-8675749,8676372-8676523,8676627-8676816,
           8676935-8677345
          Length = 616

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 163 ARGSALCPGYISSSRPGGRRCICNRPRSRACRSDSAA 53
           AR +    G   +SR GG RC   +P + A  + SAA
Sbjct: 30  ARAAVAAGGRRRTSRRGGVRCSAGKPEASAVINGSAA 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,314
Number of Sequences: 37544
Number of extensions: 287306
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)