Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30427
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       31   0.43 
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               30   0.98 
SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 105 DAFVIVQEAGPVDRTRRPCRSQNCH 31
           D  +++Q+A PVDR R  C ++N H
Sbjct: 614 DGSIVIQKASPVDRGRYTCTARNSH 638



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 96  VIVQEAGPVDRTRRPCRSQNCH 31
           +++Q+A PVDR R  C ++N H
Sbjct: 838 IVIQKASPVDRGRYTCTARNSH 859


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +1

Query: 277 NVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDKGNNFD 456
           NV TL+++ T    W N       A   SFKE +VL  Y  G YP   +    ++ NN  
Sbjct: 159 NVTTLRSLYTKS--WSNVPEQFIKAYSASFKETIVLCRY--GLYP-CNMKLFTEQVNNIG 213

Query: 457 LCSAF 471
            C +F
Sbjct: 214 RCFSF 218


>SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 66  DLQALLLGRLQMHLRPPGRELEMYPGQRADPLAVRDTGVPV*NTILQRHLHR 221
           D+ A  + +  + LRPPGR     P +  D + V D+     N++ +R  HR
Sbjct: 42  DIVAKKMAKNLLRLRPPGRRQYAAPRRPTDVILVVDSS----NSLRRREFHR 89


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 223 HNLITRNHDKCRVSEFYDNV-RTLKTVLTVDCPWLNFESNRTLAQHMS 363
           H+L  R H+      +YD   RTL+ V     PW N  S   L  H+S
Sbjct: 170 HDLANRGHNW----RYYDETFRTLRQVNPSLFPWANIHSELWLRSHVS 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,344,038
Number of Sequences: 59808
Number of extensions: 326771
Number of successful extensions: 1185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)