Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30427
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical...    29   2.0  
Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.26 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 187 TGTPVSRTARGSALCPGYISSSRPGGRRCI 98
           + TP S+T+   A+C G  SSSR G   CI
Sbjct: 10  SSTPSSQTSELCAVCGGKASSSRYGALSCI 39


>Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical
           protein W04A4.4 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 241 NHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNR 342
           N+D+ RV EF    R  K +LTV  P +  ES +
Sbjct: 88  NNDENRVWEFIQENRNSKFILTVSTPTIEEESEK 121


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 136 YISSSRPGGRRC-ICNRPRS-RACRSD 62
           +ISS RP GR C    RP S RAC +D
Sbjct: 628 WISSGRPAGRNCEQMRRPHSARACVAD 654


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
            F53B6.2a protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 136  YISSSRPGGRRC-ICNRPRS-RACRSD 62
            +ISS RP GR C    RP S RAC +D
Sbjct: 962  WISSGRPAGRNCEQMRRPHSARACVAD 988


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,485
Number of Sequences: 27780
Number of extensions: 243276
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)