Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30427
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17820.1 68414.m02206 expressed protein 31 0.35
At5g47430.1 68418.m05844 expressed protein 28 3.2
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 28 4.3
At4g17410.1 68417.m02607 expressed protein 28 4.3
At3g27930.1 68416.m03486 expressed protein 27 5.7
At2g25920.1 68415.m03110 expressed protein 27 5.7
At3g20350.1 68416.m02578 expressed protein 27 7.5
At2g24790.2 68415.m02963 zinc finger (B-box type) family protein 27 7.5
At2g24790.1 68415.m02964 zinc finger (B-box type) family protein 27 7.5
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica... 27 9.9
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 31.5 bits (68), Expect = 0.35
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 88 DDYKCISDHLAANSKCIPGRGQIPSQYEIPVFQFEIPY 201
+D K S H +++ KC PG+ + ++P+F + +
Sbjct: 266 EDRKTYSHHGSSSGKCFPGKNNMTDDTDVPIFSRSVSH 303
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 97 KCISDHLAANSKCIPGRGQIPSQYEIP 177
KCI DH+ + S C+ GR + + +P
Sbjct: 319 KCIRDHIISKSMCVCGRSDVLADDLLP 345
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 205 NATYIDHNL-ITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRT 345
+ATY+ + L + N C+V F VR L ++ P + F +N+T
Sbjct: 41 SATYVVYTLKLISNSRACQVEPFSAVVRRLNDIVNSSQPLILFHTNQT 88
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 79 CFLDDY--KCISDHLAANSKCIPGRGQIPSQYEIP 177
C L Y KCI DH+ A S C+ G + + +P
Sbjct: 222 CCLKSYCDKCIRDHIIAKSMCVCGATHVLADDLLP 256
>At3g27930.1 68416.m03486 expressed protein
Length = 425
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 515 LMWKMGRPPARSANVKAEHKSKL 447
++WKMG+ P A+V AE+ S+L
Sbjct: 392 IVWKMGKRPMYQADVDAENFSEL 414
>At2g25920.1 68415.m03110 expressed protein
Length = 280
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 71 TGPASWTITNASPTTWPRTRNV-SRAEGRSPRSTRYRCSS 187
T PAS I+NA+ TT P++R S EGR P S C S
Sbjct: 167 TCPASM-ISNAATTTTPQSRQRGSDTEGRFPSSPSDICHS 205
>At3g20350.1 68416.m02578 expressed protein
Length = 673
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 62 VRSTGPASWTITNASPTTWPRTRNVSRAEGRSPRSTRYRCSSL 190
++ TG ++ T T P T P R++ R R P TR R S +
Sbjct: 1 MKFTGKSNLTAT--LPATVPNIRDIHRRRARKPSFTRQRRSGV 41
>At2g24790.2 68415.m02963 zinc finger (B-box type) family protein
Length = 220
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 NLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDV-VLSFYING 402
N ++R H++ ++ FYD V K+ + +++ + A + KE + + + + +
Sbjct: 82 NPLSRRHERVPITPFYDAVGPAKSA-SSSVNFVDEDGGDVTASWLLAKEGIEITNLFSDL 140
Query: 403 SYPLIRLTTVFDKGNN 450
YP I +T+ + N
Sbjct: 141 DYPKIEVTSEENSSGN 156
>At2g24790.1 68415.m02964 zinc finger (B-box type) family protein
Length = 294
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 NLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDV-VLSFYING 402
N ++R H++ ++ FYD V K+ + +++ + A + KE + + + + +
Sbjct: 82 NPLSRRHERVPITPFYDAVGPAKSA-SSSVNFVDEDGGDVTASWLLAKEGIEITNLFSDL 140
Query: 403 SYPLIRLTTVFDKGNN 450
YP I +T+ + N
Sbjct: 141 DYPKIEVTSEENSSGN 156
>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1261
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 172 IPVFQFEIPYFNATYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 339
+P Q N+T I H ++T+ D + Y L+ L PWL SN
Sbjct: 983 LPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVELQITLAAIHPWLVTSSN 1038
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,123,563
Number of Sequences: 28952
Number of extensions: 220145
Number of successful extensions: 554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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