Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30426
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein ...    27   9.9  
At3g24870.1 68416.m03119 expressed protein                             27   9.9  

>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 872

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 339 INDSNLHRLNLVILKWFNII*YMFQNIYNFKN 434
           +++SNL+  +L +L WF     + +N+Y  KN
Sbjct: 57  VSESNLYCFSLALLIWFFASFILIENLYGPKN 88


>At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 441

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 339 INDSNLHRLNLVILKWFNII*YMFQNIYNFKN 434
           +++SNL+  +L +L WF     + +N+Y  KN
Sbjct: 57  VSESNLYCFSLALLIWFFASFILIENLYGPKN 88


>At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 441

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 339 INDSNLHRLNLVILKWFNII*YMFQNIYNFKN 434
           +++SNL+  +L +L WF     + +N+Y  KN
Sbjct: 57  VSESNLYCFSLALLIWFFASFILIENLYGPKN 88


>At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 407

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 153 HCNLYTY**YIMYL*QITILCIVIFLMT 236
           HC    Y  + M++   TILCI IF M+
Sbjct: 165 HCPWRNYRYFFMFVSSATILCIYIFSMS 192


>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 203  NYSMHCDIFNDT-GLKYIQNNPTLLKSVLLIQIDKT 307
            N+ +  D  N T  +KYI  NPT  K    I +DKT
Sbjct: 1066 NWELISDAMNSTLKIKYIYRNPTECKDRHKILMDKT 1101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,128,240
Number of Sequences: 28952
Number of extensions: 155835
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)