BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV30426 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) fa... 28 4.3 At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein ... 27 9.9 At3g24870.1 68416.m03119 expressed protein 27 9.9 >At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) Length = 872 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 339 INDSNLHRLNLVILKWFNII*YMFQNIYNFKN 434 +++SNL+ +L +L WF + +N+Y KN Sbjct: 57 VSESNLYCFSLALLIWFFASFILIENLYGPKN 88 >At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) Length = 441 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 339 INDSNLHRLNLVILKWFNII*YMFQNIYNFKN 434 +++SNL+ +L +L WF + +N+Y KN Sbjct: 57 VSESNLYCFSLALLIWFFASFILIENLYGPKN 88 >At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) Length = 441 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 339 INDSNLHRLNLVILKWFNII*YMFQNIYNFKN 434 +++SNL+ +L +L WF + +N+Y KN Sbjct: 57 VSESNLYCFSLALLIWFFASFILIENLYGPKN 88 >At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain Length = 407 Score = 26.6 bits (56), Expect = 9.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 153 HCNLYTY**YIMYL*QITILCIVIFLMT 236 HC Y + M++ TILCI IF M+ Sbjct: 165 HCPWRNYRYFFMFVSSATILCIYIFSMS 192 >At3g24870.1 68416.m03119 expressed protein Length = 1841 Score = 26.6 bits (56), Expect = 9.9 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +2 Query: 203 NYSMHCDIFNDT-GLKYIQNNPTLLKSVLLIQIDKT 307 N+ + D N T +KYI NPT K I +DKT Sbjct: 1066 NWELISDAMNSTLKIKYIYRNPTECKDRHKILMDKT 1101 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,128,240 Number of Sequences: 28952 Number of extensions: 155835 Number of successful extensions: 209 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 209 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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