Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30423
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 30 0.24
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 29 0.31
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 29 0.55
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 27 1.3
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 27 1.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 27 2.2
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 26 3.8
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.7
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 8.9
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 25 8.9
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 8.9
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 25 8.9
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 25 8.9
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 8.9
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 29.9 bits (64), Expect = 0.24
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +2
Query: 194 MYIMFITGAVLVITTIYILSFKVMFKNFEKNKDAWLEKAKLNDGVYAPCEIPLSESDSDE 373
+Y ++ VL+I +++ + V ++ WL+K + DGV P S +DE
Sbjct: 413 VYWLYPIAFVLIILGLFV--YHVFVDATRESIKPWLKKGQGVDGVGTVRRPPSLVSSNDE 470
Query: 374 MIKLNIKLNDRLYETVNSVKDKLTE-MAHVKNLFDRK 481
LN K + + N VK+++ + VKN+F RK
Sbjct: 471 ---LNKKNDIVVAHHDNEVKERIYDAYLSVKNVFVRK 504
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 29.5 bits (63), Expect = 0.31
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 293 AWLEKAKLNDGVYAPCEIPLSE-SDSDEMIKLNIKLNDRLYETVN---SVKDKLTE---M 451
+W EK + D ++ +SE S S ++ N LNDR +ETVN S + T M
Sbjct: 769 SWFEKKQPIDS-----DVEISEPSRSASIMVANKDLNDRSFETVNRIVSTRASTTNASFM 823
Query: 452 AHVKNLFDRKPSLKD 496
+ V+ R PS KD
Sbjct: 824 SSVRQNLGRGPSTKD 838
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 28.7 bits (61), Expect = 0.55
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 179 VEQAAMYIMFITGAVLVITTIYILSFKVMFKNFEKNKDAWLEKAKLNDGVYAPCEIPLS 355
+E +Y+ + G+VL + +I KVM F +NK + + L A IP+S
Sbjct: 354 IENGLVYMGILVGSVLTVAFYFIYLRKVMIPKFVENKGKFPAEEILIISFPAAFFIPIS 412
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 42 VAYPASRTRKDSPICTYRCSGSISECTRFHLHWSKDSNYT 161
+ YP ++ K S C+ SIS C+ +LH + N+T
Sbjct: 136 IPYPNNKAVKVSAKSLRSCNISISNCSSVNLHNATKCNFT 175
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 176 IVEQAAMYIMFITGAVLVITTIYILSFKVMFKNF 277
I+E +Y+ + GA++ + ++ +KVM F
Sbjct: 353 IIENGLVYLGILVGALITLACYFVFLYKVMIPAF 386
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.6 bits (56), Expect = 2.2
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Frame = +2
Query: 191 AMYIMF-ITGAVLVITTIYILSFKVMFKNFEKN-----KDAWLEKAKLNDGVYAPCEIPL 352
A++I F I + I T+YI K F K+ KD+WL+++K ++ + L
Sbjct: 179 ALFITFSIVPIITGILTVYIYKKKYCVIKFNKSGRSKKKDSWLKRSK-DELLRTDSANLL 237
Query: 353 SESDSDE--MIKLNIKLNDRLYETV 421
+ +D+DE MI+ + K L+ T+
Sbjct: 238 TLNDNDEPVMIRHSCKRTCILFATL 262
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -1
Query: 210 MNMIYIAACSTIGSMFRYSLNLCSSEGGSEYILISNQSIGRYILENLSVFVMLDML 43
M MI I C G +F S N + +GG ILI+ IG Y+L S L +
Sbjct: 67 MQMIAIGGCVGTG-LFVGSGNALA-DGGPASILIAFAVIGTYVLFTTSALAELSAI 120
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 218 AVLVITTIYILSFKVMFKNFEKNKDAWLE 304
A + +T IY + ++F +FE AW E
Sbjct: 567 AKITLTYIYAIKLALLFNDFEFGYAAWQE 595
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 373 FIGVALREWYLAWR 332
FI +A R+WY WR
Sbjct: 124 FIEIAKRDWYNTWR 137
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 FDIRMYSLPPSLEQRFKLYLNILPIVEQAAMYIMFITGAV-LVITTIYILSF 256
+DI LPP++ ++ Y+ + + + I+ + G++ VI T Y F
Sbjct: 460 YDIIKAKLPPNVAEKVDYYVETIIETPEIGIAIVAVLGSLTAVILTCYFYFF 511
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 106 RYQNVLASTFTGAKIQTIPKHTANS 180
+Y N+L + G KI T PKH S
Sbjct: 840 QYSNILENRQMGMKIFTDPKHWTTS 864
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 207 NMIYIAACSTIGSMFRYSLNLCSSEGGSEYILISNQS 97
N IYI +IGS+ Y L S +L+ ++S
Sbjct: 3 NTIYILGAGSIGSLLAYELASLKSINNRVILLLRDKS 39
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 53 SITNTERFSNMYLPMLWFDIRMYSLP 130
S N E++ + L +L FDI + SLP
Sbjct: 163 STKNLEKYEKIVLALLNFDIYVISLP 188
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 53 SITNTERFSNMYLPMLWFDIRMYS 124
S ++ +S+ + P+LWF I ++S
Sbjct: 157 STRKSQFYSSKFKPLLWFGITLFS 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,676
Number of Sequences: 5004
Number of extensions: 32724
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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