Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30423
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67230.1 68418.m08474 glycosyl transferase family 43 protein ...    31   0.61 
At3g07490.1 68416.m00893 calcium-binding protein, putative simil...    31   0.61 
At2g01210.1 68415.m00033 leucine-rich repeat transmembrane prote...    30   1.1  
At1g20950.1 68414.m02623 pyrophosphate--fructose-6-phosphate 1-p...    29   1.4  
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    28   3.2  
At2g35720.1 68415.m04382 DNAJ heat shock N-terminal domain-conta...    28   3.2  
At5g66210.2 68418.m08341 calcium-dependent protein kinase family...    28   4.3  
At5g66210.1 68418.m08340 calcium-dependent protein kinase family...    28   4.3  
At1g29680.1 68414.m03627 expressed protein                             28   4.3  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    27   5.7  
At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pf...    27   7.5  
At1g13120.1 68414.m01521 expressed protein contains Prosite PS00...    27   7.5  
At2g41610.1 68415.m05142 expressed protein                             27   9.9  
At1g55050.1 68414.m06288 expressed protein ; expression supporte...    27   9.9  

>At5g67230.1 68418.m08474 glycosyl transferase family 43 protein low
           similarity to Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 1, Homo sapiens
           [SP|Q9P2W7], Rattus norvegicus [SP|O35789]; contains
           Pfam domain Glycosyltransferase family 43 [PF03360]
          Length = 492

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 242 YILSFKVMFKNFEKNKDAWLEKAKLNDGVYAPCEIPLSESDSDEMIK 382
           ++L+ ++++K    +K AW++   L D  YA  E PLS      M++
Sbjct: 354 FVLNSRLLWKESLDDKPAWVKDLSLLDDGYAEIESPLSLVKDPSMVE 400


>At3g07490.1 68416.m00893 calcium-binding protein, putative similar
           to calcium-binding protein GI:6580549 from [Lotus
           japonicus]
          Length = 153

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
 Frame = +2

Query: 263 MFKNFEKNKDAWLEKAKLND-----GVYAPCE--IPLSES-DSDEMIKLNIKLNDRLYET 418
           +F+ F++N D  + K +LND     G+Y P +  + + E  D +    ++I+    LY+T
Sbjct: 9   IFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQT 68

Query: 419 VNSVKDKLTEMAHVKNLFDR 478
           +   +D+  +M    N+FD+
Sbjct: 69  IMEERDEEEDMREAFNVFDQ 88


>At2g01210.1 68415.m00033 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 716

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +2

Query: 302 EKAKLNDGVYAPCEIPLSESDSDEMIKLNIKLNDRLYETVNSVKDKLTEMAHVKNLFDRK 481
           EK  L D V  PC  P +E++ + +  L I ++      VNS  +K   M HV +  DR 
Sbjct: 658 EKKPLCD-VLDPCLAPEAETEDEIVAVLKIAIS-----CVNSSPEKRPTMRHVSDTLDRL 711

Query: 482 PSLKD 496
           P   D
Sbjct: 712 PVAGD 716


>At1g20950.1 68414.m02623 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase-related / pyrophosphate-dependent
           6-phosphofructose-1-kinase-related similar to
           pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           alpha subunit SP:Q41140 from [Ricinus communis]
          Length = 614

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 48  YPASRTRKDSPICTYRCSGSISECTRFHLHWSKDSNYT*T 167
           Y A+ T   SP+  ++C  +         HWS+D++YT T
Sbjct: 463 YMATVTNLKSPVNKWKCGATPITAMMTVKHWSQDASYTLT 502


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 278 EKNKDAWLEKAKLNDGVYAPCEIPLSESDSDEMIKLNIKLNDRL--YETVNSVKDKL 442
           EKN+  + EK   ND V  PC+   +ES  DE+ +  ++   R   + T+N+   KL
Sbjct: 356 EKNEKRFSEK---NDKVMMPCKKQKTESSDDEICEKEVQPEMRATGFATINADNLKL 409


>At2g35720.1 68415.m04382 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|O54946
           DnaJ homolog subfamily B member 6 (Heat shock protein
           J2) Mus musculus; contains Pfam profile PF00226 DnaJ
           domain
          Length = 538

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 167 ILPIVEQAAMYIMFITGAVLVITTIYILSFKVMFKNF 277
           I+PI+  A +  +F TGA +V T++Y L  K + K +
Sbjct: 354 IVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPY 390


>At5g66210.2 68418.m08341 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 523

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +2

Query: 248 LSFKVMFKNFEKNKDAWL--EKAKLNDGVYAPCEIPLSESDSDEMIKLNIKLNDRLYETV 421
           L  +  F+ F+ +KD ++  E+ +++ G+    +  L E+D D   K+++    RL  T 
Sbjct: 447 LRSRAAFEKFDLDKDGYITPEELRMHTGLRGSIDPLLDEADIDRDGKISLHEFRRLLRTA 506

Query: 422 NSVKDKLTEMAHVKNL 469
           +    +    A  +NL
Sbjct: 507 SISSQRAPSPAGHRNL 522


>At5g66210.1 68418.m08340 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 523

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +2

Query: 248 LSFKVMFKNFEKNKDAWL--EKAKLNDGVYAPCEIPLSESDSDEMIKLNIKLNDRLYETV 421
           L  +  F+ F+ +KD ++  E+ +++ G+    +  L E+D D   K+++    RL  T 
Sbjct: 447 LRSRAAFEKFDLDKDGYITPEELRMHTGLRGSIDPLLDEADIDRDGKISLHEFRRLLRTA 506

Query: 422 NSVKDKLTEMAHVKNL 469
           +    +    A  +NL
Sbjct: 507 SISSQRAPSPAGHRNL 522


>At1g29680.1 68414.m03627 expressed protein
          Length = 237

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 311 KLNDGVYAPCEIPLSESDSDEMIKLNIKLNDRLYETVNSVKDKL 442
           ++ND  +  C +  S+     +I +   ++DRLYET++  + KL
Sbjct: 65  RVNDE-FLQCAVYASDRSDAPLIGIEYVISDRLYETLSEDEQKL 107


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 353 SESDSDEMIKLNIKLNDRLYETVNSVK--DKLTEMAHVKNLFDRKPSLKDSSQTSK 514
           S+ + D    + + L  +L E    VK  D  ++++H+K+    KP+L+++  T K
Sbjct: 680 SQEELDAKKSVIVHLESKLNELEQKVKLADAKSKVSHIKHNHIFKPNLQETESTGK 735


>At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family; similar to LIM7 GI:431154
           (induced in meiotic prophase in lily microsporocytes)
           from [Lilium longiflorum]
          Length = 251

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 170 LPIVEQAAMYIMFITGAVLVITTIYILSFKVMFKNFEKNK-DAWLEKAKLNDGVYAPCEI 346
           LP+V+  ++ ++ I G  L I  +Y+  F        K K   WL    +  G+ A C +
Sbjct: 62  LPMVQPDSLLVITINGTGLAIELVYLAIFFFFSPTSRKVKVGLWLIGEMVFVGIVATCTL 121

Query: 347 PL 352
            L
Sbjct: 122 LL 123


>At1g13120.1 68414.m01521 expressed protein contains Prosite
           PS00012: Phosphopantetheine attachment site; similar to
           GLE1 (GI:3288817) {Homo sapiens}; EST gb|N37870 comes
           from this gene
          Length = 611

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 115 NVLASTFTGAKIQTIPKHTANSRASGD 195
           ++L + F  A I T+PKH  NS+++ D
Sbjct: 428 DILLAEFHKACIYTVPKHIVNSQSAWD 454


>At2g41610.1 68415.m05142 expressed protein
          Length = 310

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 8/33 (24%), Positives = 23/33 (69%)
 Frame = +2

Query: 155 LYLNILPIVEQAAMYIMFITGAVLVITTIYILS 253
           +YL ++  VE+  ++ +F+ G +L++  +Y+++
Sbjct: 261 VYLAVMSPVEEPILFRVFVFGFLLLLICVYVIT 293


>At1g55050.1 68414.m06288 expressed protein ; expression supported
           by MPSS
          Length = 914

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +1

Query: 373 NDQIKHQIK*QAIRNRQQRQGQTDRNGARQKLVRQEAVPKRFKSN 507
           +D I      ++++ ++ R+G +D N   ++ +  EAVP++  S+
Sbjct: 83  SDNIDMNESLKSLKRKRSRRGGSDGNSGSKRRMNLEAVPEKSSSS 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,629,130
Number of Sequences: 28952
Number of extensions: 168228
Number of successful extensions: 563
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)