Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30422
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.55 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   2.9  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   5.1  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   6.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   6.7  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   8.9  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 389  VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 496
            V+PF   R + P  A P R  P  + +GH   V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 410  RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 505
            R + P    P R  P ++ +GH   +++C  R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 506 SYDDKKKLFEGDLEKLNKDFLEK 438
           S  DKKK+    +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 401 QKARLPKWFGERP 363
           QK RLP+W G+ P
Sbjct: 84  QKDRLPRWIGDNP 96


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 121 SYSFVTNPLTYCYYNMNKI 65
           SY+ V    +YCY+++NK+
Sbjct: 183 SYNVVNGWYSYCYHSLNKL 201


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 473 DLEKLNKDFLEKVWQERAEQFGGRQKAR 390
           DLEKL+ +F EKV +E  E +   +K R
Sbjct: 300 DLEKLHSNFAEKV-KEEQELYKSLEKKR 326


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 497  DKKKLFEG--DLEKLNKDFLEKVWQERAEQFG 408
            DKKK+ +    +++  +  LEK W+E    FG
Sbjct: 1012 DKKKIQDTVKSIDRFKRSALEKTWREVNSSFG 1043


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,560
Number of Sequences: 5004
Number of extensions: 16404
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)