Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30418
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...   121   7e-29
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    92   5e-20
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.077
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    29   0.31 
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    27   1.3  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    27   1.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.2  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   2.2  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    26   3.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   5.1  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    25   5.1  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    25   6.7  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   6.7  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.7  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   8.9  

>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score =  121 bits (291), Expect = 7e-29
 Identities = 59/141 (41%), Positives = 90/141 (63%), Gaps = 3/141 (2%)
 Frame = +3

Query: 102 IVWVLGGPGSGKGTQCDKIVAKYG-FTHLSTGDLLRAEV-KSGSERAKCLTAIMERGELV 275
           +++VLGGPG+GKGTQCD++  K+  F H+S GD LR E  + GS+    +   ++ G++V
Sbjct: 4   VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63

Query: 276 PNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLT 452
           P EI + LL+  +    ++    FLIDG+PRE  Q   FE+++ P    +YF    ET+ 
Sbjct: 64  PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETML 123

Query: 453 QRLLGRAASSGRADDNEETIK 515
           +RL+ R  +SGR+DDN E+IK
Sbjct: 124 KRLIHRGKTSGRSDDNIESIK 144


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 91.9 bits (218), Expect = 5e-20
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
 Frame = +3

Query: 111 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIV 290
           ++G PG+GKGTQ   I  KYG  HL+TGD+LR++V   +E  K    IM++G LV ++IV
Sbjct: 8   LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIV 67

Query: 291 LDLLKEAILARAEESKGFLIDGYPREKSQG----IAFEENIAPVSVIIYFEASSETLTQR 458
             ++K+ IL   E   GF++DG+PR   Q        +E    ++ ++  +   E L +R
Sbjct: 68  TGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRR 127

Query: 459 LLGRAASSG 485
           + GR    G
Sbjct: 128 ITGRLVHPG 136


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 69  TMAPIDTSKKPI--VWVLGGP-GSGKGTQCDKIVAKYGFTHLSTGDL 200
           T+ PI+ + +P   V+V+ GP GSGK T    +  K GF ++   DL
Sbjct: 2   TVTPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 90  SKKPIVWVLGGPGSGKGTQCDKIVAKYGFT 179
           SK  I+ +LG  GSGK TQ  + +A+ G+T
Sbjct: 524 SKNQILVLLGETGSGKTTQITQYLAEEGYT 553


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 93  KKPIVWVLGGPGSGKGTQCDKIVAK 167
           ++ ++ + GGPGSGK T C  I+AK
Sbjct: 28  QRVLIGLAGGPGSGKSTLC-AILAK 51


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 84  DTSKKPIVWVLGGPGSGKGTQCDKIVAK 167
           D+ K  I+ + GGP SGK   C++++ +
Sbjct: 4   DSVKSAIIGIAGGPFSGKTQLCEQLLER 31


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +1

Query: 142 HNATRSSPNTGSLTSRLETCSGLKSKAARRGRNALPLLWKE--ASLSLMKSSWIC*KKRS 315
           ++ T +SP + SLTS   T S L S +      A   +     AS S+  SS       S
Sbjct: 97  NSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTS 156

Query: 316 WPVLKNPKASSSTATLARSHRVSLLKRTS 402
             +  +   S+++AT   S   S L  T+
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTA 185


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 78  PIDTSKKPIVWVLGGPGSGKGTQCDKIVAKY 170
           P +     IV V+G PG+GK T    +V +Y
Sbjct: 68  PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRY 98


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 ETCSGLKSKAARRGRNALPLLWKEASL 273
           + CS + S   R GR  +P+L K  SL
Sbjct: 19  DCCSAVASALLRHGRLTIPMLQKRTSL 45


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 378  GIAFEENIAPVSVIIYFEASSETLTQRLLGRAASSGRADDNEETIK 515
            GI+F+   A   V+ YF+  S T T  +LGR A +  + D    ++
Sbjct: 2561 GISFDSTKAVAPVLTYFDFCSLT-TGNILGRIALAFTSIDENANLE 2605


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 138 GTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEI--VLDLLKEA 311
           G   +KI++   + + S         K    R++C   ++  GEL+PN +  + D L+  
Sbjct: 589 GVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPNPLMNIFDQLQSI 648

Query: 312 I 314
           I
Sbjct: 649 I 649



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 381  IAFEENIAPVSVIIYFEASSETLTQRLLGRAASSGR 488
            +A +EN+ P     + EAS+  + + LL R  +SGR
Sbjct: 1145 LANQENLVPAFFNKFREASTLKIQKALLTRLLNSGR 1180


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 306 EAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 461
           EA +   E + GF+ +  P   + G+  EEN  P  + IYF  +  T T R+
Sbjct: 35  EATIPNLEVAFGFIDEVTP--VAYGVFIEENDQPAGMAIYF-LNFSTWTSRV 83


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 99  PIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLR 206
           P + + G PG+GK T  +++       ++  GD+++
Sbjct: 9   PNIIICGTPGTGKTTLAEQVAETTELENICIGDVVK 44


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 102 IVWVLGGPGSGKGTQCDKIVAKY 170
           ++ ++G  GSGK T C K+   Y
Sbjct: 103 VIMMVGLQGSGKTTTCSKLALHY 125


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 147 CDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 281
           C  I+       L+  D L   + +G++  KCL    E  EL+ N
Sbjct: 414 CQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRN 458


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 372 SQGIAFEENIAPVSVIIYFEASSETLTQRLLGRAASSGRADD 497
           S  +A  +NI  +  I+    S E +   LL +  SSG  DD
Sbjct: 377 SDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDD 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,289
Number of Sequences: 5004
Number of extensions: 40513
Number of successful extensions: 136
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)