Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30417
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41277-3|AAA82474.1| 154|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 29 2.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 3.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 3.4
AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical ... 28 3.4
U41277-4|AAA82475.1| 277|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 6.0
>U41277-3|AAA82474.1| 154|Caenorhabditis elegans Hypothetical
protein C06E4.4 protein.
Length = 154
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 NEINPDGSYTYFYETNNGIAA-QEQGVPRNLGGNPPAVP 357
N +NP T F E G+++ Q Q N+G NP A+P
Sbjct: 98 NTVNPGVVATGFMEVATGLSSEQSQTFYDNVGSNPSAIP 136
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = +1
Query: 337 GNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARAL 504
G P PVV QG W+ + P A E PT A PP P Q A L
Sbjct: 70 GQDPTTPVVPQGGTGWSKSDN-PNG----AAEPPQTPTNQAPAVPPPPPPQPANDL 120
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 253 NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 429
N DG + F E G + G P L P+ ++ G +S +SP+ S +Y
Sbjct: 1535 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1592
Query: 430 ENGYQPTGNAIPTSPPVPEQIARALAY 510
Y PT A SP P + +Y
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1619
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 340 NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 474
+P A S+S TSP P S +Y Y PT + PTSP
Sbjct: 1600 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 474
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 253 NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 429
N DG + F E G + G P L P+ ++ G +S +SP+ S +Y
Sbjct: 1542 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1599
Query: 430 ENGYQPTGNAIPTSPPVPEQIARALAY 510
Y PT A SP P + +Y
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1626
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 340 NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 474
+P A S+S TSP P S +Y Y PT + PTSP
Sbjct: 1607 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 474
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659
>AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical
protein C08G5.5 protein.
Length = 99
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 391 PEGVP--ISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIA 516
P G+P +S +Y A PT P++PP+P + AY A
Sbjct: 44 PSGLPPMVSESYSAPYAQAPPTSTGYPSAPPMPRPSSPPPAYSA 87
>U41277-4|AAA82475.1| 277|Caenorhabditis elegans Hypothetical
protein C06E4.3 protein.
Length = 277
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 244 NEINPDGSYTYFYETNNGIAAQE-QGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNY 420
N +NP T F+E+ G++ +E Q +G N A+P G PE + ++ +
Sbjct: 189 NTVNPGVVATGFHESCTGLSTEESQKFYDKVGANKSAIPCGFSG-----RPEHIAKAIAF 243
Query: 421 VADEN 435
+AD +
Sbjct: 244 LADRD 248
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 368 RAHSPGHLLKVFPSASITSPTRTDTSPLVMLSPLPHQCLSRS 493
R P L AS++S + + + P + +SPLP+ +SR+
Sbjct: 77 REKHPKKLKMELAHASLSSASSSQSPPSLPISPLPYHIVSRN 118
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 368 RAHSPGHLLKVFPSASITSPTRTDTSPLVMLSPLPHQCLSRS 493
R P L AS++S + + + P + +SPLP+ +SR+
Sbjct: 79 REKHPKKLKMELAHASLSSASSSQSPPSLPISPLPYHIVSRN 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,054
Number of Sequences: 27780
Number of extensions: 278469
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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