Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30415
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   2e-40
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             160   5e-40
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     158   3e-39
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)            141   4e-34
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   1e-16
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 32   0.24 
SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 28   4.0  
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     28   4.0  
SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         27   6.9  
SB_44299| Best HMM Match : IWS1_C (HMM E-Value=3.9)                    27   9.2  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_33836| Best HMM Match : PsbI (HMM E-Value=2)                        27   9.2  
SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  162 bits (393), Expect = 2e-40
 Identities = 79/134 (58%), Positives = 104/134 (77%)
 Frame = +1

Query: 103 RXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 282
           R  L+  AKL+EQ +RYD+MA  MKEV+E   +LS EERNLLSV+YKN+VG RRSSWRVI
Sbjct: 84  RETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRSSWRVI 143

Query: 283 SSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMK 462
           SSIE+KT  S     + K+Y+  +EKEL+++C +VLG+L++ LIP A + E+KVFY K+K
Sbjct: 144 SSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLK 201

Query: 463 GDYYRYLAEVATGE 504
           GDYYRYLAE + G+
Sbjct: 202 GDYYRYLAEFSHGQ 215


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  160 bits (389), Expect = 5e-40
 Identities = 80/117 (68%), Positives = 88/117 (75%)
 Frame = +1

Query: 160 MAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKE 339
           MA AMKE TE    L  EERNLLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q  + 
Sbjct: 1   MAKAMKEATEISETLEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTET 60

Query: 340 YRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 510
           YR  +E EL E+C  VL LL+  LIP A + ESKVFYLKMKGDYYRY  EVA  + R
Sbjct: 61  YRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRR 117


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  158 bits (383), Expect = 3e-39
 Identities = 81/140 (57%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
 Frame = +1

Query: 100 TRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 279
           +R EL+  AK+AEQAERYDDM  AM  VT+ G  L++EERNLLSVAYKNVVGARRSSWRV
Sbjct: 10  SREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGARRSSWRV 69

Query: 280 ISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKAS---NPESKVFY 450
           ISS+EQK    E    + K+YR  +  EL   C +VL +L+ +L+       N E+KVFY
Sbjct: 70  ISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDINTEAKVFY 127

Query: 451 LKMKGDYYRYLAEVATGETR 510
           LKM+GDY+RYL EVA G++R
Sbjct: 128 LKMRGDYHRYLVEVAEGDSR 147


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score =  141 bits (341), Expect = 4e-34
 Identities = 72/122 (59%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
 Frame = +1

Query: 103 RXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 282
           + E V  AKLAEQAERYDDM  +MKEV + G ELS E+RNLLSVAYKNV+GARR+SWR+I
Sbjct: 4   KEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRASWRII 63

Query: 283 SSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYL 453
           +SIEQK E  G +  K +M + YR  +E+EL+ IC ++L LLD  LI  + + ESKVFY 
Sbjct: 64  TSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFYN 123

Query: 454 KM 459
           K+
Sbjct: 124 KI 125


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
 Frame = +1

Query: 100 TRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 279
           +R ELVQ AKLAEQ ER++D+   MK+  E    L+ E RNLLSV YKNVVG++R +WR 
Sbjct: 189 SRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNVVGSKRFAWRH 248

Query: 280 ISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYDVL 390
           +     ++    R  Q+    +Y+ K+E EL+ +C ++L
Sbjct: 249 LHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +1

Query: 124 AKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKT 303
           AK  ++ ER +  A   K+  E   +   EE++ L    K     R+    + + IE+K 
Sbjct: 346 AKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEINAKIEEKK 405

Query: 304 EGSERKQQMAKEYRVKVEK 360
           +  E+K+Q  +E   K E+
Sbjct: 406 KREEKKKQEEEEKMKKKEQ 424


>SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 70  VLFHRPRCPSTRXELVQRAKLAEQAERYDDMAAAMKEVT-ETGVELSNEERNLLSVAYK 243
           V F  P CP TR     R  +A     Y    A MK +  + G ELS E+  +   A K
Sbjct: 314 VYFTTPPCPGTRATKPFRENIAALVVFYTPSKADMKAILHDYGAELSEEKMKVYMKALK 372


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
 Frame = +1

Query: 112 LVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGAR------RSSW 273
           L +  K A   +R   +A+A+ +     +   +     LS   K VV  +      +  W
Sbjct: 282 LSEMFKQAVTEDRPKMLASAITKALNQDIHSPSALNLPLSTPAKQVVKTKWDRIREKHQW 341

Query: 274 RVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 429
            ++S  E+    +ER++Q   E +VK E++ R+   ++  +   HL  K SN
Sbjct: 342 NLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +1

Query: 121 RAKLAEQAERYDDMAAAM-KEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQ 297
           + K+ +++E+YD +   + KE T+ G   +  E    +    N   AR  +    ++ + 
Sbjct: 13  KRKIFKKSEKYDRLEEPLEKEGTDGGEIEAEAEVEPHTEEEANYNEARSENCEKNNNNDS 72

Query: 298 KTEGSERKQQMAKEYRVKVEKELRE 372
            T  ++ +Q   KE+ V +EK+L++
Sbjct: 73  STPDAKSQQADIKEWIVSLEKQLKD 97


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 274  RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 378
            R++  IE+K E  E  ++ AKE + + E+E + IC
Sbjct: 919  RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 319 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 420
           K++M ++Y  K+EKE+    Y+++  L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325


>SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 379 YDVLGLLDKHLIPKASNPESKVFYLKMKGDYY 474
           YD   ++  HL+P A     +++ +K+  DYY
Sbjct: 6   YDSNTVVSHHLLPSAQTRYIRIYPVKVNSDYY 37


>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 148 RYDDMAAAMKEVTETGVELSNEERNLLSV 234
           +YD++ AA+K+ T TG+  S  +  L  V
Sbjct: 57  KYDNLLAAVKDATNTGIRESGIDARLCDV 85



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 148 RYDDMAAAMKEVTETGVELSNEERNLLSV 234
           +YD++ AA+K+ T TG+  S  +  L  V
Sbjct: 163 KYDNLLAAVKDATNTGIRESGIDARLCDV 191


>SB_44299| Best HMM Match : IWS1_C (HMM E-Value=3.9)
          Length = 454

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +1

Query: 211 EERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVL 390
           +ER + +V  ++   ARRSS R + +++  TE +  +     E +V   +  R I     
Sbjct: 310 DERLVAAVVMQSRSEARRSSRRTMQTVQDTTENTLDRNN--NEIKVTKTQPSRRISVSDP 367

Query: 391 GLLDKH-LIPKASNPESKVFYLKMKGDYYR 477
            LL +  L+ + ++P       + K + YR
Sbjct: 368 KLLPRRPLVEETTSPSPNSLIEEAKTNKYR 397


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +1

Query: 97   STRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 276
            + R    +R  L  Q E   D+  + KE+ E        ++N + V +     ARR  + 
Sbjct: 2102 ANRAASYERKLLLLQQEEIADLRRSTKEIREKVKAEKPRDQNAVEVTHWYSADARREPYL 2161

Query: 277  VISSIEQKTEGS 312
             ++S+ +   G+
Sbjct: 2162 AVNSVARGNAGN 2173


>SB_33836| Best HMM Match : PsbI (HMM E-Value=2)
          Length = 241

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +1

Query: 115 VQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV-ISSI 291
           + R +L++    Y  MAA + E TE   E    + N+L+    + V A    W + +   
Sbjct: 152 ISRDQLSQLLLVYVGMAADIMEFTEIIKEDEIRKVNMLN--NNHFVNAVILFWSMSLFQF 209

Query: 292 EQKTEGSERKQQMAKEYRVKVEKELRE 372
                G+ER  Q  ++ + K+E+EL +
Sbjct: 210 TLTISGTERTAQRLEKEKAKIEEELHK 236


>SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/43 (20%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
 Frame = +1

Query: 283 SSIEQKTEGSERKQQMAKEYRVKVE----KELREICYDVLGLL 399
           +S+ +K E      ++ + Y++K++    K+++++C+ V+G++
Sbjct: 20  NSLREKVERKTISNRITRNYKMKLQPMEIKDMKKLCFAVIGVI 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,887
Number of Sequences: 59808
Number of extensions: 282667
Number of successful extensions: 809
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)