Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30413
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 31 0.14
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.3
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 1.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 3.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 3.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 5.1
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 5.1
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 25 6.7
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 6.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 8.9
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 8.9
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 8.9
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 103 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 231
T + GR+ +P S+K R + +RS S R E+RYRPTRR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +2
Query: 260 TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 439
TL S T T+S P Y + S+ T + + T S T S + QD
Sbjct: 236 TLESSSLTNTVS-PTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQD 294
Query: 440 ACDVELIPST 469
+ ++ PST
Sbjct: 295 STTIDSTPST 304
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/90 (20%), Positives = 33/90 (36%)
Frame = +2
Query: 161 SPSCVL*KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCL 340
+PS L S + P+S + T S FTT +++ +P T+
Sbjct: 484 TPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSS 543
Query: 341 SIARSTATPRALSMPTTTLALSIITGQSTT 430
S S+ + + + +LS + T
Sbjct: 544 SFQYSSLSSNVTTTNAQSSSLSSSNSSALT 573
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 429 RAKTRATWS*SLRRPQGMAGPSRQA-GCHR 515
R+ ++ +WS LRRP P RQ+ G HR
Sbjct: 244 RSPSKGSWSSILRRPSLTYSPKRQSTGLHR 273
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +1
Query: 187 SEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREI---Y 357
S D+ E RR+ P+ + SK+ Y P E I + V + Y
Sbjct: 573 SSDVHKNENAGTARRA--PQS-GAFVASKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQY 629
Query: 358 GYSPRPIYAHNYPRSL 405
+ PRP N PRSL
Sbjct: 630 SFQPRPATPSNPPRSL 645
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = +1
Query: 226 RRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSL 405
RR V+ YP K Y +A + PG R SP A R
Sbjct: 665 RRMVWAWRGEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIA 724
Query: 406 DYYRPIYH 429
DY R +YH
Sbjct: 725 DYSRKVYH 732
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.8
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 245 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQS 424
+S TLT S +T+ S+P +T + LS + S++T + S ++ ++ S + S
Sbjct: 224 SSSSSTLTSSSLSTS-SIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Query: 425 --TTCQDACDVELIPSTPTRHGRTIST 499
+T S+PT TIS+
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISS 309
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 284 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIP 463
TT S PL P+ V C IA + ALS+ A G TC+D +P
Sbjct: 82 TTYSYPLISGGAPSAVWCWLIAGAGCMCIALSVAELVSAYPTSGGLYFTCKDLVPARSMP 141
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 304 ERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIY 426
++ +V Y P H S RPI +N DY +Y
Sbjct: 875 DKDSVDAYNRFPFHSYFGDKSKRPIETYNKDNFFDYATKLY 915
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 188 RKTSEPRKGTGQHAAA--FFPNSCRPTLTPSRFT 283
++T+ + GT +A A F PN P TP +FT
Sbjct: 415 KETTGTKLGTKLNAKAISFKPNVAAPVFTPGKFT 448
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 281 TTTLSLPLRGLRYPATVTCLSIA---RSTATPRALSMPTTTLALSIITGQS 424
T + S L G+R +T IA S P +S PT+ LAL ++ QS
Sbjct: 220 TLSKSFGLAGIRIGFCLTSKPIATIMNSLKAPYNISEPTSRLALDALSPQS 270
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 120 WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLLQVDLRRPYRC 299
W+ D + ++ AV+ A ++ G++ ++P R + P+ + L V +
Sbjct: 719 WETPD-IRVMRVKAVMPANNRAAVLRIYAGRLGVSSPVRTAPHPMAMSLPFVHHGKNKAL 777
Query: 300 R*EDYGTRLPLPACPSRDL 356
++ TR P+P CPS DL
Sbjct: 778 ---EFVTRHPVPHCPSVDL 793
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 8.9
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 284 TTLSLPLRGLRYPATVTCLS---IARSTATPRALSMPTTTLALSIITGQSTTCQDACDVE 454
T+ + P G + ++ + LS I+ S++TP S+PT++ LS ++T V
Sbjct: 68 TSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILS-----NSTIPTTSPVP 122
Query: 455 LIPSTPTRHGRTISTGWLPS 514
STPT +S +PS
Sbjct: 123 TTSSTPT-SSSILSNSTIPS 141
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 8.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 314 RYPATVTCLSIARST-ATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHG 484
R P T L++A + +TP A ++ TTT A I T S + +D+ L P+ G
Sbjct: 748 REPIRATRLALAGALPSTPTATTISTTTSASGITTTASNS-RDSFITRLPPTAALSTG 804
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 196 CLPNLLENARRTAKIWLSSTASRFCQSCLNV 104
C +L +AR K WLSS S LN+
Sbjct: 157 CDEEILVDARNQIKNWLSSELSHSTSKYLNI 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,945
Number of Sequences: 5004
Number of extensions: 46812
Number of successful extensions: 167
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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