Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30413
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1181 + 10148653-10149405 33 0.18
07_03_0518 + 19007793-19008722 31 0.55
07_03_0512 - 18954515-18955972 31 0.73
07_03_0514 + 18984375-18985865 29 1.7
09_03_0006 + 11426346-11426420,11426733-11427452 29 2.9
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714 28 3.9
12_02_0674 - 21745321-21746223,21746229-21747608 28 5.1
10_08_0739 + 20217842-20218852 28 5.1
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 28 5.1
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 28 5.1
07_03_0515 + 18992296-18993720 27 6.8
10_06_0049 - 10063273-10063665 27 8.9
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 27 8.9
05_04_0259 + 19494629-19495394,19495408-19495949 27 8.9
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 8.9
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303... 27 8.9
02_02_0617 - 12184745-12185008,12185352-12185451,12186585-121866... 27 8.9
>06_01_1181 + 10148653-10149405
Length = 250
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 325 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVPRRVRRG 453
+RY+ VH +Y P+ + YP ++ P HV VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197
>07_03_0518 + 19007793-19008722
Length = 309
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 462 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 334
G NST + WH V WP+ E+ + R GVAV++ +DR+
Sbjct: 198 GWNSTLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVEMEVDRK 243
>07_03_0512 - 18954515-18955972
Length = 485
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 462 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 340
G NST + WH +V WP+ E+ + R GVAV L +D
Sbjct: 369 GWNSTLESLWHGVPLVPWPLYAEQRLNAFELVRDMGVAVPLGVD 412
>07_03_0514 + 18984375-18985865
Length = 496
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 462 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 334
G NS + WH V WP+ E+ + R GVAV L +DR+
Sbjct: 381 GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVPLGVDRE 426
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 PTLTPSRFTT-TLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTC 433
P L P T T L PA + C + + + P M T ++LS + G + T
Sbjct: 161 PALRPMSLTRLTPFAALSTSTCPAAIACCAASTAVWNPNDRLM--TPMSLSAVFGIAATA 218
Query: 434 QDACDVELIPSTPT 475
+ ++PS+PT
Sbjct: 219 EPRHAPRIVPSSPT 232
>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
Length = 411
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 513 DGSQPVEMVLPCLVGVEGINSTSHASWHVVDW 418
D V V C++ + G+ T++ +W +V+W
Sbjct: 279 DNGLMVSRVESCVIKLPGVMGTANETWSIVEW 310
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 27.9 bits (59), Expect = 5.1
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Frame = +2
Query: 212 GTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTT 391
GT + + A PT+ T L + P+T + + STAT + S P T
Sbjct: 473 GTSELSTASTGELPSPTVKIPTTACTGELSTPTSQIPSTASTREL--STATGKIPSTPRT 530
Query: 392 ---TLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPS 514
+ A S I T + IPSTP+ + +TG +PS
Sbjct: 531 NPLSTATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPS 574
>10_08_0739 + 20217842-20218852
Length = 336
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +3
Query: 228 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSR 407
P S LP + P+R PLP PS L L+P+ P LP L+
Sbjct: 26 PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLAL 78
Query: 408 LLQANLPRAKTR 443
+ P R
Sbjct: 79 KAVTSFPANSPR 90
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 177 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 302
SKR +HQ+R T +R F R PV LP ++ +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 377 SMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGW 505
S T+TL+ + T ++ D + L P+T T GR +T W
Sbjct: 209 SPTTSTLSGRVTTTAWSSTSDVAFLPLPPTTSTLSGRVTTTAW 251
>07_03_0515 + 18992296-18993720
Length = 474
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 462 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMDRQ 334
G NST + W +V WP+ E+ + A GVAV + +DR+
Sbjct: 365 GWNSTLESLWFGVPMVPWPLYAEQHLNAFTLVAAMGVAVAMKVDRK 410
>10_06_0049 - 10063273-10063665
Length = 130
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 383 PTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLP 511
P L+L ++ + C C E + TPT HG+ G P
Sbjct: 8 PFIALSLLLLAVIANGCTPNCPGEQVVPTPTHHGKNGGHGRCP 50
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 171 HEGLPKSGFLRRRLVSANHV*MCFEHFGGLCRARIRLN 58
H L + GF R +VS N + +C+ G +C AR N
Sbjct: 227 HNMLKRKGF-ERNVVSWNSMMICYIKAGDVCSARALFN 263
>05_04_0259 + 19494629-19495394,19495408-19495949
Length = 435
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 278 FTTTLSLPLRGLRYPATVTCLSIARSTATPRALSM--PTTTLALSIITGQSTTCQDACDV 451
F + + G P T L+IA+S LSM P T L SI ++ T A +
Sbjct: 263 FIGVTGIKVNGRAVPLNATLLAIAKSGVGGTKLSMLSPYTVLETSIY--KAVTDAFAAET 320
Query: 452 ELIPSTP 472
+IP P
Sbjct: 321 AMIPRVP 327
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +1
Query: 214 YRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNY 393
Y PT + P S P S S P + + T P Y Y P YSP ++NY
Sbjct: 1683 YNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSP---SYSPTS-PSYNY 1738
Query: 394 PRSLDYYRP 420
+ Y P
Sbjct: 1739 SPTSPSYSP 1747
>02_03_0138 -
15629421-15629440,15629521-15629752,15630115-15630348,
15630486-15630709,15631225-15631509,15631549-15631690
Length = 378
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 127 NETPSKKARFWQSFVRSLKGSEDIRAEER 213
+E +++ WQ+F+ +KG E+ EE+
Sbjct: 135 HELATRQVECWQAFLSPMKGKEEDEGEEK 163
>02_02_0617 -
12184745-12185008,12185352-12185451,12186585-12186653,
12187988-12188037
Length = 160
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 315 GTRLPLPACPSRDLRLLPAPYLCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQGMAGPS 494
G R P S DL LL +P L ++ PRA+ TWS S G+A P
Sbjct: 99 GERRRHPLTMSLDLALLAPEATGSGVPKLGTA-RSTAPRARVVQTWSPSRLVVTGVAPPH 157
Query: 495 R 497
R
Sbjct: 158 R 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,357
Number of Sequences: 37544
Number of extensions: 350239
Number of successful extensions: 1165
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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