Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30413
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac... 30 1.1
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 29 1.9
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 29 1.9
At5g23910.1 68418.m02808 kinesin motor protein-related 29 2.5
At5g55540.1 68418.m06919 expressed protein 28 3.2
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 28 3.2
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.2
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 28 4.3
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 4.3
At3g44290.1 68416.m04756 no apical meristem (NAM) family protein... 27 5.7
At3g42070.1 68416.m04317 hypothetical protein 27 7.5
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 7.5
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 27 9.9
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte... 27 9.9
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 27 9.9
>At3g54990.1 68416.m06102 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2, Arabidopsis thaliana, U12546
Length = 247
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 48 YDRYLTEYEH-DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 212
YDR ++ D D V + +RHD K + + + + LR S FGR S+ K
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 42 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 206
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 204 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 257
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 42 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 206
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 275 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 328
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 272 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 403
S+ T L L+G +TCL++ R T R + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 245 SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 147
SGKT+ R G L+ L+S + FRE R D NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 115 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 294
++ R E SK + Q +S + I A R + + +TY Y K Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209
Query: 295 AAAERITVPGYRYLPVHREI 354
E + Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 462 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 340
G NST + W V WP+ E+ + + G+AVDL MD
Sbjct: 369 GWNSTLESLWFGVPVATWPMYAEQQLNAFTLVKELGLAVDLRMD 412
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 311 LRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQS 424
+R P++ CLS + +TAT +++ + +A LS+ T QS
Sbjct: 15 IRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQS 53
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 337 PVHREIYG-YSPRPIYAHNYPRSLDYYRPIY 426
PVH + ++P P Y H YP + Y P++
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGPVH 146
>At3g44290.1 68416.m04756 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
NAC2 - Arabidopsis thaliana, EMBL:AF201456
Length = 335
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 480 CLVGVEGINSTSHASWHVVDWPVII 406
C +G+ I S + A W VV W +++
Sbjct: 302 CFIGIYSIKSINRARWDVVVWLLVM 326
>At3g42070.1 68416.m04317 hypothetical protein
Length = 230
Score = 27.1 bits (57), Expect = 7.5
Identities = 21/94 (22%), Positives = 37/94 (39%)
Frame = +1
Query: 154 FWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRY 333
FW F + S+D E P R Y +++ + A +++ +
Sbjct: 97 FWSRFGNGIYDSKDAVHSEIRHPVLR---------YLVDRNVNFGSVFAHHLVSLKTKPF 147
Query: 334 LPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVP 435
H E+ G+ P P H+ PR++ + Y VP
Sbjct: 148 TGEHEEL-GFHPDPSLLHSAPRTMKHRALPYQVP 180
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 384 PQLPSLSRLLQANLPRAK 437
PQLPS RLL NLP K
Sbjct: 653 PQLPSFKRLLAMNLPEWK 670
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 185 VRKTSEPRKGTGQHAAAFFPNSCRPTL 265
V KT P+ G G H+A P RP+L
Sbjct: 295 VPKTPPPKNGAGLHSAPSTPAGGRPSL 321
>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 632
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 182 KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSR 277
K++KT+EP GTG NS PTL P R
Sbjct: 394 KLQKTAEPCHGTGVENEM---NSLTPTLKPCR 422
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity to
DNA Helicase recQl4B [Arabidopsis thaliana] GI:11121451;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00570:
HRDC domain
Length = 1024
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 311 LRYPATVTCLSIARSTATPRALSMPTTTLALS 406
+R+P+T+ ++STA P + + TTL ++
Sbjct: 928 MRFPSTIKVSKQSKSTANPAKVPLKQTTLPMA 959
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,685
Number of Sequences: 28952
Number of extensions: 254961
Number of successful extensions: 791
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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