Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30410
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   3.8  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   3.8  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   6.7  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   6.7  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   6.7  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   6.7  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   8.9  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 220 LITLNNYNEQEDEFTTILTSKILILYLIFFCKKN 119
           +I +  YN ++D   TI  + ++I +++F C K+
Sbjct: 196 VIAVGLYNSKKDLVVTIWLAWVVICFILFGCVKD 229


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 220 LITLNNYNEQEDEFTTILTSKILILYLIFFCKKN 119
           +I +  YN ++D   TI  + ++I +++F C K+
Sbjct: 186 VIAVGLYNSKKDLVVTIWLAWVVICFILFGCVKD 219


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 503 ICYRYMPFGILIICMYPNTIQMKF 432
           IC  Y+ FG  ++C++ NTI   F
Sbjct: 42  IC-SYIMFGFALVCLFTNTIVFFF 64


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 503 ICYRYMPFGILIICMYPNTIQMKF 432
           IC  Y+ FG  ++C++ NTI   F
Sbjct: 42  IC-SYIMFGFALVCLFTNTIVFFF 64


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 503 ICYRYMPFGILIICMYPNTIQMKF 432
           IC  Y+ FG  ++C++ NTI   F
Sbjct: 42  IC-SYIMFGFALVCLFTNTIVFFF 64


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 503 ICYRYMPFGILIICMYPNTIQMKF 432
           IC  Y+ FG  ++C++ NTI   F
Sbjct: 42  IC-SYIMFGFALVCLFTNTIVFFF 64


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 409 CKFGLKI*NFIWIVFGY 459
           C FGL    F+WI++GY
Sbjct: 22  CVFGLGF--FVWIIYGY 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,163
Number of Sequences: 5004
Number of extensions: 39115
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)