Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30410
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143...    27   8.9  

>01_05_0195 -
           19111983-19112477,19112646-19113950,19114053-19114322,
           19118884-19118950,19119229-19119284,19119530-19119590,
           19120181-19120297,19120570-19120682,19120774-19120848,
           19121464-19122045,19122056-19122271,19122372-19122497,
           19126152-19126190,19126266-19126360,19126423-19126962,
           19127102-19127327,19127385-19127437,19127534-19127701,
           19128353-19128707,19128785-19128876,19129891-19129993
          Length = 1717

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 392 MILINFVNLV*KYK--TSFG*YLGTYK*SKYRTACICNKCTVI 514
           +++  ++NL  KY+  TSFG  L        +  C C KC V+
Sbjct: 514 IVVERYINLFCKYEEATSFGSKLEVSMRLSNKVTCHCGKCVVV 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,677,120
Number of Sequences: 37544
Number of extensions: 180900
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)