Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30410
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56086| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 29   1.7  
SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)              28   5.3  
SB_18043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_56086| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 520

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 476 ILIICMYPNTIQMKFYIFKPNLQN 405
           +L+ C  PNTI    Y+F  NL+N
Sbjct: 252 LLLFCAVPNTIVWYIYLFNENLRN 275


>SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 449 TIQMKFYIFKPNLQNLLESYDKKIRGTKFMSQTKEYF 339
           T +  F  F P  Q  + S  K +R   F S+TK Y+
Sbjct: 313 TYENNFDPFAPESQKWMLSLSKNLRNQTFFSKTKNYY 349


>SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)
          Length = 1002

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 510 TVHLLQIHAVRYFDHLYVPKYY 445
           TVH+   HA +Y DH+YV  Y+
Sbjct: 24  TVHVGIDHATQYIDHMYVCVYH 45


>SB_18043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 162 LVNIVVNSSSCSL*LFNVINKYTRGLI*YLKRH*NKLLCPKN 287
           L NI+   +S SL L   I+KY R L+ Y        LCPKN
Sbjct: 70  LSNILAVFASSSLMLKQNIDKYYRVLVKYHVSRLRFALCPKN 111


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 229 VYLLITLNNYNEQEDEFTTILTSK 158
           V L++T+NNYN+ +   T  +T+K
Sbjct: 16  VMLILTINNYNDDDCVETAFITNK 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,477
Number of Sequences: 59808
Number of extensions: 240167
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)