Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30410
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm rece...    29   2.6  
Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 222 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 213 VINKYTRGLI*YLKRH*NKLLCPKNLRTDEKNLS 314
           +I  Y R L+ YL+   N+ LC K++ +D +N S
Sbjct: 309 IIKDYRRALLNYLRWIKNRFLCRKHVVSDVRNAS 342


>Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical
           protein T01H10.2 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 516 TITVHLLQIHAVRYFDHLYVPKYY 445
           T TV  +  HA+ Y   LYVPKY+
Sbjct: 5   TFTVIFIGSHALYYNPELYVPKYH 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,687,244
Number of Sequences: 27780
Number of extensions: 208792
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)