Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30410
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   10.0 

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 423 KNIKLHLDSIWVHTNDQNTERHVSVTN 503
           +N+K+ LD +  HT+DQ+    +S+ N
Sbjct: 110 QNLKVILDLVPNHTSDQHKWFQMSINN 136


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 423 KNIKLHLDSIWVHTNDQNTERHVSVTNV 506
           K +K+ LD +  HT+DQ+    +S+ N+
Sbjct: 112 KGLKIILDFVPNHTSDQHEWFQLSLKNI 139


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 423 KNIKLHLDSIWVHTNDQNTERHVSVTNV 506
           K +K+ LD +  HT+DQ+    +S+ N+
Sbjct: 112 KGLKIILDFVPNHTSDQHEWFQLSLKNI 139


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 482 FGILIICMYPNTIQMKFYIFKPNLQNLLESYDKKIRGTK 366
           +G+ I C+ PN  ++  +  K   QN   ++D   + +K
Sbjct: 589 YGVWINCLDPNLPKLALFATKDIKQNEEITFDYMCQSSK 627


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 477 YFDHLYVPKYYPNEVL 430
           YF+H Y  K++  E++
Sbjct: 415 YFEHRYQGKFFDEELI 430


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 477 YFDHLYVPKYYPNEVL 430
           YF+H Y  K++  E++
Sbjct: 383 YFEHRYQGKFFDEELI 398


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 346 STSVTLCIYLLDRFFSSVLRF 284
           STS  L  Y +  +F+S++RF
Sbjct: 13  STSFILINYFIFLYFNSLVRF 33


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 337 VTLCIYLLDRF 305
           V L +YLLDRF
Sbjct: 579 VALVLYLLDRF 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,250
Number of Sequences: 438
Number of extensions: 2969
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)