Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30410
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48860.1 68418.m06044 hypothetical protein                          27   7.5  
At5g22100.1 68418.m02573 RNA cyclase family protein contains Pfa...    27   9.9  
At5g15500.2 68418.m01815 ankyrin repeat family protein contains ...    27   9.9  
At5g15500.1 68418.m01814 ankyrin repeat family protein contains ...    27   9.9  

>At5g48860.1 68418.m06044 hypothetical protein 
          Length = 175

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 455 PNTIQMKFYIFKPNLQNLLESYDKKIRGTK 366
           P+T Q+   +  P + N ++SY  K+RG+K
Sbjct: 70  PSTSQLHHIMDPPEIPNPVQSYTWKLRGSK 99


>At5g22100.1 68418.m02573 RNA cyclase family protein contains Pfam
           profiles: PF01137 RNA 3'-terminal phosphate cyclase,
           PF05189 RNA 3-prime-terminal phosphate cyclase (RTC)
          Length = 375

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 398 ESYDKKIRGTKFMSQTKEYFSHIMYLFIR*IF 303
           E   KKIRGT F ++    F H M    R IF
Sbjct: 183 EGMVKKIRGTTFSTRVTSDFEHSMRFAARGIF 214


>At5g15500.2 68418.m01815 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 457

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -3

Query: 223 LLITLNNYNEQEDEFTTILTSKILILYLIFFCKKNTERIKTK 98
           L I +NNY+++E     +   K+L+ +++  C+K+ E I+T+
Sbjct: 144 LHIAVNNYDQREG----LSVLKVLMGWILRLCQKDAEWIETR 181


>At5g15500.1 68418.m01814 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 351

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -3

Query: 223 LLITLNNYNEQEDEFTTILTSKILILYLIFFCKKNTERIKTK 98
           L I +NNY+++E     +   K+L+ +++  C+K+ E I+T+
Sbjct: 38  LHIAVNNYDQREG----LSVLKVLMGWILRLCQKDAEWIETR 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,058
Number of Sequences: 28952
Number of extensions: 175021
Number of successful extensions: 344
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)