Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30408
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.80 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   2.5  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   2.5  
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    28   4.3  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    27   7.5  
At4g38560.1 68417.m05459 expressed protein                             27   9.9  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    27   9.9  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 249 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 154
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 432 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 331
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 423 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 316
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 363 PLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 202
           P  V  + ++E  +E    ++ K       H + + YP  +++T+S+  P V W
Sbjct: 339 PDKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -2

Query: 278 LTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 117
           LT  + +V++ H+  RL +    ++  DL+  ++PS+  V+  C      +++Q
Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 58  GDTANGSIYQFWFLRSYSVTWITVVILEL 144
           GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 360 GDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 384 EREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDTGLL 494
           ER   K  P  RK   +    S H ++ T  NDT  L
Sbjct: 271 ERHTHKSRPRSRKHVESSHQSSHHNDIRTAKNDTSQL 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,528,592
Number of Sequences: 28952
Number of extensions: 240678
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)