Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30407
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A7L3 Cluster: Putative uncharacterized protein; n=3; ...    33   5.1  
UniRef50_UPI000049A17C Cluster: conserved hypothetical protein; ...    32   6.8  

>UniRef50_Q4A7L3 Cluster: Putative uncharacterized protein; n=3;
           Mycoplasma hyopneumoniae|Rep: Putative uncharacterized
           protein - Mycoplasma hyopneumoniae (strain 7448)
          Length = 337

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 80  IQKYIQSSIFTLLRSTFIFYLLIKNFKIFGQDSHFYFYFIMI 205
           I K +  ++F +L +TF  ++++ NFKIF +    Y+  + I
Sbjct: 250 IDKNLGLTVFIILEATFFTFMIVLNFKIFREYFESYYKILTI 291


>UniRef50_UPI000049A17C Cluster: conserved hypothetical protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 198

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 50  FLISIFL*YNIQKYIQSSIFTLLRSTFIFYL-----LIKNFKIFGQDSHFYFYFIMI 205
           FLI +F+ YN  K ++   F    + +IFYL     L+    +F    H+YF  + +
Sbjct: 71  FLIHMFMLYNFSKELEEEYFNNDTTDYIFYLLFNCCLLNILSVFVGPLHYYFISLFV 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,454,418
Number of Sequences: 1657284
Number of extensions: 5856142
Number of successful extensions: 12764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12756
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)