Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30407
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740...    30   1.3  
11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312...    28   5.1  
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910...    27   6.8  

>11_06_0559 +
           24972403-24972445,24972590-24972680,24973911-24974030,
           24974121-24974237,24974745-24974840,24975317-24975610,
           24977153-24977258,24977365-24977566,24977671-24977792
          Length = 396

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 301 KFFILFCHDLK*IKTYYSNFHSYTFN 378
           ++ +  CH    +++Y+ NFH Y FN
Sbjct: 292 QYHLELCHQCFHVESYFQNFHHYNFN 317


>11_06_0554 -
           24930437-24930552,24930878-24931079,24931164-24931269,
           24931357-24931599,24932398-24932484,24932695-24932825,
           24933177-24933183,24933695-24933789
          Length = 328

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +1

Query: 337 IKTYYSNFHSYTFN----PYFSIPINIFLFYAQIR 429
           ++ YY NFH Y FN     Y S   N  +++A+++
Sbjct: 238 VENYYENFHHYNFNVKMKKYDSDDWNETIYFAEVK 272


>03_02_0522 +
           9103357-9103437,9103538-9103592,9103687-9103739,
           9103832-9104060,9104149-9104284,9104448-9104496,
           9105123-9105248,9106003-9106110,9106255-9106395
          Length = 325

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 361 HSYTFNPYFSIPINIFLFYAQIRNKVAR 444
           +  T+NP++S+ +    +Y  +R K++R
Sbjct: 292 YELTYNPFYSVSVGKLAYYGCLRLKISR 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,910,513
Number of Sequences: 37544
Number of extensions: 128123
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)