Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30407
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55717| Best HMM Match : SLEI_Leptospira (HMM E-Value=3.3)           28   5.3  
SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_55717| Best HMM Match : SLEI_Leptospira (HMM E-Value=3.3)
          Length = 126

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 50  FLISIFL*YNIQKYIQSSIFTLLRSTFIFYLL 145
           FLIS+ +  NIQ  ++S  F  L  +F+FY L
Sbjct: 36  FLISLEMAKNIQTVMKSLFFRRLALSFVFYSL 67


>SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 KFFILFCHDLK*IKTYYSNFHSYT--FNPYFSIPINIFLFY 417
           KFF   CH  + ++   S+ HS++  +  Y S  I+ F FY
Sbjct: 51  KFFASSCHTFENLRRISSDRHSFSRVYYKYLSNRISKFFFY 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,330
Number of Sequences: 59808
Number of extensions: 169898
Number of successful extensions: 256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)