Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30407
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   10.0 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   10.0 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   10.0 
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   10.0 
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   10.0 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   10.0 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   10.0 

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +3

Query: 69  YDTTYKNTYNPQFSPFY 119
           Y+  Y N YN  +   Y
Sbjct: 101 YNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +3

Query: 69  YDTTYKNTYNPQFSPFY 119
           Y+  Y N YN  +   Y
Sbjct: 101 YNNNYNNNYNNNYKKLY 117


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 337 IKTYYSNFHSYTFNPYFSI 393
           +  YY NF   +  P+ SI
Sbjct: 119 VPVYYGNFPPRSMGPWISI 137


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 337 IKTYYSNFHSYTFNPYFSI 393
           +  YY NF   +  P+ SI
Sbjct: 119 VPVYYGNFPPRSMGPWISI 137


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 337 IKTYYSNFHSYTFNPYFSI 393
           +  YY NF   +  P+ SI
Sbjct: 119 VPVYYGNFPPRSMGPWISI 137


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 337 IKTYYSNFHSYTFNPYFSI 393
           +  YY NF   +  P+ SI
Sbjct: 352 VPVYYGNFPPRSMGPWISI 370


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 346 YYSNFHSYTFNPYFSIPINIFLFYAQIRNKVARWQSNI 459
           YY +  +  FN  F   +N     +  +  + RW +N+
Sbjct: 303 YYKSGSTVPFNFMFIADLNNQSTASDFKQLIDRWVANV 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,922
Number of Sequences: 438
Number of extensions: 2185
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)